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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00992
         (507 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47830|RL27A_XENLA  60S ribosomal protein L27a (L22)           193   2e-49
sp|P18445|RL27A_RAT  60S ribosomal protein L27a                   187   9e-48
sp|Q5REY2|RL27A_PONPY  60S ribosomal protein L27a >gi|117301...   187   1e-47
sp|Q5R1X0|RL27A_PANTR  60S ribosomal protein L27a                 186   4e-47
sp|P14115|RL27A_MOUSE  60S ribosomal protein L27a (L29)           185   5e-47
sp|O01358|RL27A_OSCBR  60S ribosomal protein L27a (Ribosomal...   172   5e-43
sp|P41092|RL27A_DROME  60S ribosomal protein L27a                 165   5e-41
sp|P48160|RL27A_DICDI  60S ribosomal protein L27a                 157   1e-38
sp|Q27021|RL27A_TENMO  60S ribosomal protein L27a                 157   2e-38
sp|Q9BI14|R27A3_ENTHI  60S ribosomal protein L27a-3               153   3e-37

>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
          Length = 148

 Score =  193 bits (490), Expect = 2e-49
 Identities = 92/145 (63%), Positives = 108/145 (74%)
 Frame = +3

Query: 48  KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 227
           K +KTRKL                      NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4   KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63

Query: 228 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 407
           +KN++FCP+IN+DK+W+LVSE+T   +  N EG AP+ID + AGY+KVLG G LPK PVI
Sbjct: 64  KKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVI 123

Query: 408 VKAKFFSRQAEEKIKSVGGACVLVA 482
           VKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 124 VKAKFFSRKAEEKIKSVGGACVLGA 148

>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
          Length = 148

 Score =  187 bits (476), Expect = 9e-48
 Identities = 87/145 (60%), Positives = 107/145 (73%)
 Frame = +3

Query: 48  KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 227
           + +KTRKL                      NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4   RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63

Query: 228 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 407
           ++N++FCP++N+DK+W+LVSE+T      N  G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64  KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123

Query: 408 VKAKFFSRQAEEKIKSVGGACVLVA 482
           VKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKGVGGACVLVA 148

>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
 sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
          Length = 148

 Score =  187 bits (475), Expect = 1e-47
 Identities = 87/145 (60%), Positives = 108/145 (74%)
 Frame = +3

Query: 48  KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 227
           + +KTRKL                      NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4   RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63

Query: 228 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 407
           ++N++FCP++N+DK+W+LVSE+T      N  G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64  KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123

Query: 408 VKAKFFSRQAEEKIKSVGGACVLVA 482
           VKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKSVGGACVLVA 148

>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
          Length = 148

 Score =  186 bits (471), Expect = 4e-47
 Identities = 86/144 (59%), Positives = 107/144 (74%)
 Frame = +3

Query: 48  KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 227
           + +KTRKL                      NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4   RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63

Query: 228 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 407
           ++N++FCP++N+DK+W+LVSE+T      N  G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64  KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123

Query: 408 VKAKFFSRQAEEKIKSVGGACVLV 479
           VKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 124 VKAKFFSRRAEEKIKSVGGACVLV 147

>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
          Length = 148

 Score =  185 bits (470), Expect = 5e-47
 Identities = 87/145 (60%), Positives = 106/145 (73%)
 Frame = +3

Query: 48  KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 227
           + +KTRKL                      NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4   RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63

Query: 228 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 407
           ++N++FCP++N+DK W+LVSE+T      N  G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64  KRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123

Query: 408 VKAKFFSRQAEEKIKSVGGACVLVA 482
           VKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKGVGGACVLVA 148

>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
          Length = 145

 Score =  172 bits (435), Expect = 5e-43
 Identities = 84/143 (58%), Positives = 104/143 (72%)
 Frame = +3

Query: 54  KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 233
           +KTRKL                      NAGGQHHHRI+ DK+HPGYFGKVGMR +HL K
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65

Query: 234 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 413
           N  +CP++N+D++W+LV E+  +  K +AE KAPVIDC+KAGYFKVLG G+LPK P+IVK
Sbjct: 66  NHHYCPTVNVDRLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVK 122

Query: 414 AKFFSRQAEEKIKSVGGACVLVA 482
           AKFFS +AE KIK+ GGAC+LVA
Sbjct: 123 AKFFSHEAENKIKAAGGACILVA 145

>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
          Length = 149

 Score =  165 bits (418), Expect = 5e-41
 Identities = 80/149 (53%), Positives = 98/149 (65%)
 Frame = +3

Query: 36  MSKIKAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMR 215
           MS IK KKTRKL                      NAGG HHHRI+FDK+HPGYFGKVGMR
Sbjct: 1   MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 60

Query: 216 HYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPK 395
           ++HLR+   F P IN+DK+WSLV  + +   +     KAPVID +K GY+K+LG G LP 
Sbjct: 61  NFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA 120

Query: 396 VPVIVKAKFFSRQAEEKIKSVGGACVLVA 482
            PVIVKAK+FS++AE+KIK  GG C+L A
Sbjct: 121 RPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149

>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
          Length = 148

 Score =  157 bits (397), Expect = 1e-38
 Identities = 67/115 (58%), Positives = 94/115 (81%)
 Frame = +3

Query: 138 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 317
           NAGG  HHRI+FDK+HPGYFGK+GMRH+HL +N+  CP+++++KIW+LV E   ++    
Sbjct: 34  NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93

Query: 318 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 482
            +G APV+D  + G+FKVLG+G+LP  P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 94  NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148

>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
          Length = 148

 Score =  157 bits (396), Expect = 2e-38
 Identities = 75/143 (52%), Positives = 97/143 (67%)
 Frame = +3

Query: 54  KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 233
           KKTRKL                      NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+
Sbjct: 6   KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRR 65

Query: 234 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 413
           N  + P+IN+DK+W+LVSE+T   Y+++ EGKAPVID +KAGY+K+LG G       ++K
Sbjct: 66  NSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLSLLK 125

Query: 414 AKFFSRQAEEKIKSVGGACVLVA 482
             F   + E+KIK+VGGACVL A
Sbjct: 126 PSFSLNRLEDKIKAVGGACVLSA 148

>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
          Length = 149

 Score =  153 bits (386), Expect = 3e-37
 Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
 Frame = +3

Query: 138 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 317
           NAGGQHH +  F  FHP YFGK GMR +HL+ N+ +CPSIN+D +WSLV +   E YK+ 
Sbjct: 34  NAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNA 93

Query: 318 AEG-KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 482
             G + PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 94  KTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,395,189
Number of Sequences: 369166
Number of extensions: 888192
Number of successful extensions: 2418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2377
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_028_A18
2. Dr_sW_025_A11
3. Dr_sW_002_A09
4. Dr_sW_018_L23
5. Dr_sW_018_K24
6. Dr_sW_013_L05
7. Dr_sW_003_B03
8. Dr_sW_024_E02
9. Dr_sW_002_O08
10. Dr_sW_016_G15
11. Dr_sW_016_A22
12. Dr_sW_017_A16
13. Dr_sW_020_E01
14. Dr_sW_022_M03
15. Dr_sW_022_F14
16. Dr_sW_006_D10
17. Dr_sW_006_P15
18. Dr_sW_018_E14