Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_D10
(444 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 190 1e-48
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 186 3e-47
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 185 3e-47
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 184 1e-46
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 183 1e-46
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 170 1e-42
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 157 1e-38
sp|P41092|RL27A_DROME 60S ribosomal protein L27a 156 2e-38
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a 154 8e-38
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 153 2e-37
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 190 bits (482), Expect = 1e-48
Identities = 86/115 (74%), Positives = 101/115 (87%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL+KN++FCP+IN+DK+W+LVSE+T + N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKN 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
EG AP+ID + AGY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 94 LEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 186 bits (471), Expect = 3e-47
Identities = 82/115 (71%), Positives = 100/115 (86%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N+DK+W+LVSE+T N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94 KNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 185 bits (470), Expect = 3e-47
Identities = 82/115 (71%), Positives = 101/115 (87%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N+DK+W+LVSE+T N
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 94 KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 184 bits (466), Expect = 1e-46
Identities = 81/114 (71%), Positives = 100/114 (87%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N+DK+W+LVSE+T N
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 416
G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 94 KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 183 bits (465), Expect = 1e-46
Identities = 82/115 (71%), Positives = 99/115 (86%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N+DK W+LVSE+T N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKN 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94 KTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 170 bits (431), Expect = 1e-42
Identities = 79/115 (68%), Positives = 98/115 (85%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGGQHHHRI+ DK+HPGYFGKVGMR +HL KN +CP++N+D++W+LV E+ + K +
Sbjct: 34 NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEE--QKTKVS 91
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
AE KAPVIDC+KAGYFKVLG G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 92 AE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 157 bits (397), Expect = 1e-38
Identities = 67/115 (58%), Positives = 94/115 (81%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHRI+FDK+HPGYFGK+GMRH+HL +N+ CP+++++KIW+LV E ++
Sbjct: 34 NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
+G APV+D + G+FKVLG+G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 94 NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
Length = 149
Score = 156 bits (394), Expect = 2e-38
Identities = 70/115 (60%), Positives = 88/115 (76%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGKVGMR++HLR+ F P IN+DK+WSLV + + +
Sbjct: 35 NAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKE 94
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
KAPVID +K GY+K+LG G LP PVIVKAK+FS++AE+KIK GG C+L A
Sbjct: 95 KSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
Length = 148
Score = 154 bits (389), Expect = 8e-38
Identities = 69/115 (60%), Positives = 91/115 (79%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+N + P+IN+DK+W+LVSE+T Y+++
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNH 93
Query: 255 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
EGKAPVID +KAGY+K+LG G ++K F + E+KIK+VGGACVL A
Sbjct: 94 PEGKAPVIDIVKAGYYKLLGKGACLTNLSLLKPSFSLNRLEDKIKAVGGACVLSA 148
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 153 bits (386), Expect = 2e-37
Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Frame = +3
Query: 75 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 254
NAGGQHH + F FHP YFGK GMR +HL+ N+ +CPSIN+D +WSLV + E YK+
Sbjct: 34 NAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNA 93
Query: 255 AEG-KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 419
G + PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 94 KTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,081,425
Number of Sequences: 369166
Number of extensions: 799637
Number of successful extensions: 2237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2205
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2344429560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)