Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A16
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 193 2e-49
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 187 8e-48
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 187 1e-47
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 186 3e-47
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 185 4e-47
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 172 4e-43
sp|P41092|RL27A_DROME 60S ribosomal protein L27a 162 4e-40
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 157 1e-38
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a 157 1e-38
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 153 2e-37
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 193 bits (490), Expect = 2e-49
Identities = 92/145 (63%), Positives = 108/145 (74%)
Frame = +1
Query: 25 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 204
K +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 205 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 384
+KN++FCP+IN+DK+W+LVSE+T + N EG AP+ID + AGY+KVLG G LPK PVI
Sbjct: 64 KKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVI 123
Query: 385 VKAKFFSRQAEEKIKSVGGACVLVA 459
VKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 124 VKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 187 bits (476), Expect = 8e-48
Identities = 87/145 (60%), Positives = 107/145 (73%)
Frame = +1
Query: 25 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 204
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 205 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 384
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 385 VKAKFFSRQAEEKIKSVGGACVLVA 459
VKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 187 bits (475), Expect = 1e-47
Identities = 87/145 (60%), Positives = 108/145 (74%)
Frame = +1
Query: 25 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 204
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63
Query: 205 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 384
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 385 VKAKFFSRQAEEKIKSVGGACVLVA 459
VKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 186 bits (471), Expect = 3e-47
Identities = 86/144 (59%), Positives = 107/144 (74%)
Frame = +1
Query: 25 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 204
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63
Query: 205 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 384
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 385 VKAKFFSRQAEEKIKSVGGACVLV 456
VKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 124 VKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 185 bits (470), Expect = 4e-47
Identities = 87/145 (60%), Positives = 106/145 (73%)
Frame = +1
Query: 25 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 204
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 205 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 384
++N++FCP++N+DK W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 385 VKAKFFSRQAEEKIKSVGGACVLVA 459
VKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 124 VKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 172 bits (435), Expect = 4e-43
Identities = 84/143 (58%), Positives = 104/143 (72%)
Frame = +1
Query: 31 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 210
+KTRKL NAGGQHHHRI+ DK+HPGYFGKVGMR +HL K
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65
Query: 211 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 390
N +CP++N+D++W+LV E+ + K +AE KAPVIDC+KAGYFKVLG G+LPK P+IVK
Sbjct: 66 NHHYCPTVNVDRLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVK 122
Query: 391 AKFFSRQAEEKIKSVGGACVLVA 459
AKFFS +AE KIK+ GGAC+LVA
Sbjct: 123 AKFFSHEAENKIKAAGGACILVA 145
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
Length = 149
Score = 162 bits (410), Expect = 4e-40
Identities = 78/148 (52%), Positives = 97/148 (65%)
Frame = +1
Query: 16 AKIKAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRH 195
+ IK KKTRKL NAGG HHHRI+FDK+HPGYFGKVGMR+
Sbjct: 2 SNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRN 61
Query: 196 YHLRKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKV 375
+HLR+ F P IN+DK+WSLV + + + KAPVID +K GY+K+LG G LP
Sbjct: 62 FHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPAR 121
Query: 376 PVIVKAKFFSRQAEEKIKSVGGACVLVA 459
PVIVKAK+FS++AE+KIK GG C+L A
Sbjct: 122 PVIVKAKYFSKKAEDKIKKAGGVCLLSA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 157 bits (397), Expect = 1e-38
Identities = 67/115 (58%), Positives = 94/115 (81%)
Frame = +1
Query: 115 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 294
NAGG HHRI+FDK+HPGYFGK+GMRH+HL +N+ CP+++++KIW+LV E ++
Sbjct: 34 NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93
Query: 295 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 459
+G APV+D + G+FKVLG+G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 94 NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
Length = 148
Score = 157 bits (396), Expect = 1e-38
Identities = 75/143 (52%), Positives = 97/143 (67%)
Frame = +1
Query: 31 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 210
KKTRKL NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+
Sbjct: 6 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRR 65
Query: 211 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 390
N + P+IN+DK+W+LVSE+T Y+++ EGKAPVID +KAGY+K+LG G ++K
Sbjct: 66 NSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLSLLK 125
Query: 391 AKFFSRQAEEKIKSVGGACVLVA 459
F + E+KIK+VGGACVL A
Sbjct: 126 PSFSLNRLEDKIKAVGGACVLSA 148
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 153 bits (386), Expect = 2e-37
Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Frame = +1
Query: 115 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 294
NAGGQHH + F FHP YFGK GMR +HL+ N+ +CPSIN+D +WSLV + E YK+
Sbjct: 34 NAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNA 93
Query: 295 AEG-KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 459
G + PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 94 KTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,019,100
Number of Sequences: 369166
Number of extensions: 822004
Number of successful extensions: 2262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)