Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_K24
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 103 9e-23
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 102 2e-22
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 101 6e-22
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 101 6e-22
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 99 3e-21
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 95 4e-20
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 90 1e-18
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 89 3e-18
sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29) 88 7e-18
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 87 9e-18
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 103 bits (258), Expect = 9e-23
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K+W+LVSE+T + N EG AP+ID + AGY+KVLG G LPK PVIVKAKFFSR+AEEK
Sbjct: 77 KLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEK 136
Query: 182 IKSVGGACVLVA 217
IKSVGGACVL A
Sbjct: 137 IKSVGGACVLGA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 102 bits (255), Expect = 2e-22
Identities = 50/72 (69%), Positives = 59/72 (81%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEK
Sbjct: 77 KLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEK 136
Query: 182 IKSVGGACVLVA 217
IKSVGGACVLVA
Sbjct: 137 IKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 101 bits (251), Expect = 6e-22
Identities = 49/71 (69%), Positives = 58/71 (81%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEK
Sbjct: 77 KLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEK 136
Query: 182 IKSVGGACVLV 214
IKSVGGACVLV
Sbjct: 137 IKSVGGACVLV 147
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 101 bits (251), Expect = 6e-22
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEK
Sbjct: 77 KLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEK 136
Query: 182 IKSVGGACVLVA 217
IK VGGACVLVA
Sbjct: 137 IKGVGGACVLVA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 99.0 bits (245), Expect = 3e-21
Identities = 49/72 (68%), Positives = 57/72 (79%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEK
Sbjct: 77 KPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEK 136
Query: 182 IKSVGGACVLVA 217
IK VGGACVLVA
Sbjct: 137 IKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 95.1 bits (235), Expect = 4e-20
Identities = 48/72 (66%), Positives = 60/72 (83%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
++W+LV E+ + K +AE KAPVIDC+KAGYFKVLG G+LPK P+IVKAKFFS +AE K
Sbjct: 77 RLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENK 133
Query: 182 IKSVGGACVLVA 217
IK+ GGAC+LVA
Sbjct: 134 IKAAGGACILVA 145
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 90.1 bits (222), Expect = 1e-18
Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Frame = +2
Query: 5 IWSLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
+WSLV + E YK+ G+ PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++K
Sbjct: 78 LWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQK 137
Query: 182 IKSVGGACVLVA 217
IK+VGGAC L A
Sbjct: 138 IKAVGGACELTA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 89.0 bits (219), Expect = 3e-18
Identities = 40/72 (55%), Positives = 56/72 (77%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
KIW+LV E ++ +G APV+D + G+FKVLG+G+LP P+IVKA++FS+ AE+K
Sbjct: 77 KIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKK 136
Query: 182 IKSVGGACVLVA 217
IK+VGGAC+LVA
Sbjct: 137 IKAVGGACILVA 148
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29)
Length = 149
Score = 87.8 bits (216), Expect = 7e-18
Identities = 43/72 (59%), Positives = 55/72 (76%)
Frame = +2
Query: 2 KIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
K+WSLVS+ T + Y ++ + K PVID KAG+FKVLG G LP PV+VKAK+FS+ AE +
Sbjct: 79 KLWSLVSDATRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERR 137
Query: 182 IKSVGGACVLVA 217
I +VGGACVL A
Sbjct: 138 IVAVGGACVLTA 149
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 87.4 bits (215), Expect = 9e-18
Identities = 42/72 (58%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = +2
Query: 5 IWSLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEK 181
+WSLV + YK+ G+ PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++K
Sbjct: 78 LWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQK 137
Query: 182 IKSVGGACVLVA 217
IK+VGGAC L A
Sbjct: 138 IKAVGGACELTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,236,870
Number of Sequences: 369166
Number of extensions: 362522
Number of successful extensions: 1075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)