Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O08
(131 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 62 3e-10
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 61 9e-10
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 61 9e-10
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 61 9e-10
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 60 2e-09
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 56 3e-08
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 54 9e-08
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 50 2e-06
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 50 2e-06
sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 50 2e-06
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 62.4 bits (150), Expect = 3e-10
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 109
G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 59.7 bits (143), Expect = 2e-09
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 115 GKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 55.8 bits (133), Expect = 3e-08
Identities = 25/34 (73%), Positives = 30/34 (88%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 112 GLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 54.3 bits (129), Expect = 9e-08
Identities = 23/35 (65%), Positives = 32/35 (91%)
Frame = +2
Query: 8 NGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
+G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 114 HGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 116 GFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 116 GFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1
Length = 149
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = +2
Query: 11 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 112
G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 116 GFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,533,764
Number of Sequences: 369166
Number of extensions: 138285
Number of successful extensions: 464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 68,354,980
effective HSP length: 17
effective length of database: 65,214,485
effective search space used: 1695576610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)