Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A09
(108 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 61 9e-10
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 59 3e-09
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 59 3e-09
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 59 3e-09
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 58 6e-09
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 54 1e-07
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 52 6e-07
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 48 6e-06
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 48 6e-06
sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 48 6e-06
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 60.8 bits (146), Expect = 9e-10
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 117 LPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/31 (93%), Positives = 30/31 (96%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 96
LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 117 LPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 117 LPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 117 LPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 58.2 bits (139), Expect = 6e-09
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 117 LPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 53.5 bits (127), Expect = 1e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +1
Query: 1 VLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 113 LLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 51.6 bits (122), Expect = 6e-07
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = +1
Query: 1 VLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 116 ILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 118 LPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 118 LPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1
Length = 149
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 4 LPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 99
LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 118 LPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,118,528
Number of Sequences: 369166
Number of extensions: 104096
Number of successful extensions: 384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 68,354,980
effective HSP length: 9
effective length of database: 66,692,365
effective search space used: 1734001490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)