Planarian EST Database


Dr_sW_013_L05

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_013_L05
         (417 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P47830|RL27A_XENLA  60S ribosomal protein L27a (L22)           190   1e-48
sp|P18445|RL27A_RAT  60S ribosomal protein L27a                   186   2e-47
sp|Q5REY2|RL27A_PONPY  60S ribosomal protein L27a >gi|117301...   185   3e-47
sp|Q5R1X0|RL27A_PANTR  60S ribosomal protein L27a                 184   8e-47
sp|P14115|RL27A_MOUSE  60S ribosomal protein L27a (L29)           183   1e-46
sp|O01358|RL27A_OSCBR  60S ribosomal protein L27a (Ribosomal...   170   9e-43
sp|P48160|RL27A_DICDI  60S ribosomal protein L27a                 157   8e-39
sp|P41092|RL27A_DROME  60S ribosomal protein L27a                 156   2e-38
sp|Q27021|RL27A_TENMO  60S ribosomal protein L27a                 154   7e-38
sp|Q9BI14|R27A3_ENTHI  60S ribosomal protein L27a-3               153   2e-37
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
          Length = 148

 Score =  190 bits (482), Expect = 1e-48
 Identities = 86/115 (74%), Positives = 101/115 (87%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGMRHYHL+KN++FCP+IN+DK+W+LVSE+T   +  N
Sbjct: 34  NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKN 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
            EG AP+ID + AGY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 94  LEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
          Length = 148

 Score =  186 bits (471), Expect = 2e-47
 Identities = 82/115 (71%), Positives = 100/115 (86%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N+DK+W+LVSE+T      N
Sbjct: 34  NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
             G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94  KNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
 sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
          Length = 148

 Score =  185 bits (470), Expect = 3e-47
 Identities = 82/115 (71%), Positives = 101/115 (87%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N+DK+W+LVSE+T      N
Sbjct: 34  NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
             G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 94  KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
          Length = 148

 Score =  184 bits (466), Expect = 8e-47
 Identities = 81/114 (71%), Positives = 100/114 (87%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N+DK+W+LVSE+T      N
Sbjct: 34  NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 405
             G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 94  KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
          Length = 148

 Score =  183 bits (465), Expect = 1e-46
 Identities = 82/115 (71%), Positives = 99/115 (86%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N+DK W+LVSE+T      N
Sbjct: 34  NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKN 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
             G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94  KTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
          Length = 145

 Score =  170 bits (431), Expect = 9e-43
 Identities = 79/115 (68%), Positives = 98/115 (85%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGGQHHHRI+ DK+HPGYFGKVGMR +HL KN  +CP++N+D++W+LV E+  +  K +
Sbjct: 34  NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEE--QKTKVS 91

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
           AE KAPVIDC+KAGYFKVLG G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 92  AE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
          Length = 148

 Score =  157 bits (397), Expect = 8e-39
 Identities = 67/115 (58%), Positives = 94/115 (81%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG  HHRI+FDK+HPGYFGK+GMRH+HL +N+  CP+++++KIW+LV E   ++    
Sbjct: 34  NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
            +G APV+D  + G+FKVLG+G+LP  P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 94  NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
          Length = 149

 Score =  156 bits (394), Expect = 2e-38
 Identities = 70/115 (60%), Positives = 88/115 (76%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGKVGMR++HLR+   F P IN+DK+WSLV  + +   +  
Sbjct: 35  NAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKE 94

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
              KAPVID +K GY+K+LG G LP  PVIVKAK+FS++AE+KIK  GG C+L A
Sbjct: 95  KSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
          Length = 148

 Score =  154 bits (389), Expect = 7e-38
 Identities = 69/115 (60%), Positives = 91/115 (79%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+N  + P+IN+DK+W+LVSE+T   Y+++
Sbjct: 34  NAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNH 93

Query: 244 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
            EGKAPVID +KAGY+K+LG G       ++K  F   + E+KIK+VGGACVL A
Sbjct: 94  PEGKAPVIDIVKAGYYKLLGKGACLTNLSLLKPSFSLNRLEDKIKAVGGACVLSA 148
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
          Length = 149

 Score =  153 bits (386), Expect = 2e-37
 Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
 Frame = +1

Query: 64  NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 243
           NAGGQHH +  F  FHP YFGK GMR +HL+ N+ +CPSIN+D +WSLV +   E YK+ 
Sbjct: 34  NAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNA 93

Query: 244 AEG-KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 408
             G + PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 94  KTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,223,077
Number of Sequences: 369166
Number of extensions: 753167
Number of successful extensions: 2120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)