Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_E02
(291 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 144 5e-35
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 140 7e-34
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 140 9e-34
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 139 2e-33
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 138 4e-33
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 126 1e-29
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 118 4e-27
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 116 1e-26
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 115 2e-26
sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29) 115 3e-26
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 144 bits (364), Expect = 5e-35
Identities = 68/94 (72%), Positives = 80/94 (85%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGMRHYHL+KN++FCP+IN+DK+W LVSE+T + N EG AP+ID + AGY+KVLG
Sbjct: 55 KVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGK 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 115 GKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 140 bits (354), Expect = 7e-34
Identities = 64/94 (68%), Positives = 80/94 (85%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGM+HYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG
Sbjct: 55 KVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGK 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 140 bits (353), Expect = 9e-34
Identities = 64/94 (68%), Positives = 79/94 (84%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGMRHYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG
Sbjct: 55 KVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGK 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 139 bits (350), Expect = 2e-33
Identities = 63/93 (67%), Positives = 79/93 (84%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGM+HYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG
Sbjct: 55 KVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGK 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 279
G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 138 bits (347), Expect = 4e-33
Identities = 64/94 (68%), Positives = 78/94 (82%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGMRHYHL++N++FCP++N+DK W LVSE+T N G AP+ID +++GY+KVLG
Sbjct: 55 KVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGK 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 126 bits (317), Expect = 1e-29
Identities = 61/94 (64%), Positives = 77/94 (81%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
KVGMR +HL KN +CP++N+D++W LV E+ + K +AE KAPVIDC+KAGYFKVLG
Sbjct: 55 KVGMRVFHLNKNHHYCPTVNVDRLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGK 111
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 112 GLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 118 bits (296), Expect = 4e-27
Identities = 55/95 (57%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLG 177
K GMR +HL+ N+ +CPSIN+D +W LV + E YK+ G+ PVIDC+K GYFKVLG
Sbjct: 55 KHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLG 114
Query: 178 NGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 115 KGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 116 bits (291), Expect = 1e-26
Identities = 50/94 (53%), Positives = 74/94 (78%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
K+GMRH+HL +N+ CP+++++KIW LV E ++ +G APV+D + G+FKVLG+
Sbjct: 55 KLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGH 114
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 115 GILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 115 bits (289), Expect = 2e-26
Identities = 54/95 (56%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLG 177
K GMR +HL+ N+ +CPSIN+D +W LV + YK+ G+ PVIDC+K GYFKVLG
Sbjct: 55 KHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLG 114
Query: 178 NGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 115 KGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29)
Length = 149
Score = 115 bits (288), Expect = 3e-26
Identities = 55/94 (58%), Positives = 71/94 (75%)
Frame = +1
Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180
K+GMR +HL+KN CP +NIDK+W LVS+ T + Y ++ + K PVID KAG+FKVLG
Sbjct: 57 KLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKK-KVPVIDVTKAGFFKVLGK 115
Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282
G LP PV+VKAK+FS+ AE +I +VGGACVL A
Sbjct: 116 GRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,644,093
Number of Sequences: 369166
Number of extensions: 507033
Number of successful extensions: 1359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)