Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_024_E02 (291 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 144 5e-35 sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 140 7e-34 sp|P18445|RL27A_RAT 60S ribosomal protein L27a 140 9e-34 sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 139 2e-33 sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 138 4e-33 sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 126 1e-29 sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 118 4e-27 sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 116 1e-26 sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 115 2e-26 sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29) 115 3e-26
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) Length = 148 Score = 144 bits (364), Expect = 5e-35 Identities = 68/94 (72%), Positives = 80/94 (85%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGMRHYHL+KN++FCP+IN+DK+W LVSE+T + N EG AP+ID + AGY+KVLG Sbjct: 55 KVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGK 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A Sbjct: 115 GKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a Length = 148 Score = 140 bits (354), Expect = 7e-34 Identities = 64/94 (68%), Positives = 80/94 (85%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGM+HYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG Sbjct: 55 KVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGK 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a Length = 148 Score = 140 bits (353), Expect = 9e-34 Identities = 64/94 (68%), Positives = 79/94 (84%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGMRHYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG Sbjct: 55 KVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGK 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a Length = 148 Score = 139 bits (350), Expect = 2e-33 Identities = 63/93 (67%), Positives = 79/93 (84%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGM+HYHL++N++FCP++N+DK+W LVSE+T N G AP+ID +++GY+KVLG Sbjct: 55 KVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGK 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 279 G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) Length = 148 Score = 138 bits (347), Expect = 4e-33 Identities = 64/94 (68%), Positives = 78/94 (82%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGMRHYHL++N++FCP++N+DK W LVSE+T N G AP+ID +++GY+KVLG Sbjct: 55 KVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGK 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27) Length = 145 Score = 126 bits (317), Expect = 1e-29 Identities = 61/94 (64%), Positives = 77/94 (81%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 KVGMR +HL KN +CP++N+D++W LV E+ + K +AE KAPVIDC+KAGYFKVLG Sbjct: 55 KVGMRVFHLNKNHHYCPTVNVDRLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGK 111 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA Sbjct: 112 GLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 Length = 149 Score = 118 bits (296), Expect = 4e-27 Identities = 55/95 (57%), Positives = 72/95 (75%), Gaps = 1/95 (1%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLG 177 K GMR +HL+ N+ +CPSIN+D +W LV + E YK+ G+ PVIDC+K GYFKVLG Sbjct: 55 KHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNAKTGEEVPVIDCVKHGYFKVLG 114 Query: 178 NGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIV+A++FS +A++KIK+VGGAC L A Sbjct: 115 KGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a Length = 148 Score = 116 bits (291), Expect = 1e-26 Identities = 50/94 (53%), Positives = 74/94 (78%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 K+GMRH+HL +N+ CP+++++KIW LV E ++ +G APV+D + G+FKVLG+ Sbjct: 55 KLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGH 114 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA Sbjct: 115 GILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 Length = 149 Score = 115 bits (289), Expect = 2e-26 Identities = 54/95 (56%), Positives = 71/95 (74%), Gaps = 1/95 (1%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGK-APVIDCLKAGYFKVLG 177 K GMR +HL+ N+ +CPSIN+D +W LV + YK+ G+ PVIDC+K GYFKVLG Sbjct: 55 KHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLG 114 Query: 178 NGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LPK PVIV+A++FS +A++KIK+VGGAC L A Sbjct: 115 KGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29) Length = 149 Score = 115 bits (288), Expect = 3e-26 Identities = 55/94 (58%), Positives = 71/94 (75%) Frame = +1 Query: 1 KVGMRHYHLRKNRTFCPSINIDKIWRLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGN 180 K+GMR +HL+KN CP +NIDK+W LVS+ T + Y ++ + K PVID KAG+FKVLG Sbjct: 57 KLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKK-KVPVIDVTKAGFFKVLGK 115 Query: 181 GVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 282 G LP PV+VKAK+FS+ AE +I +VGGACVL A Sbjct: 116 GRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,644,093 Number of Sequences: 369166 Number of extensions: 507033 Number of successful extensions: 1359 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1335 length of database: 68,354,980 effective HSP length: 66 effective length of database: 56,162,470 effective search space used: 1684874100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)