Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A18
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 180 2e-45
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 172 4e-43
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 171 6e-43
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 171 6e-43
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 169 2e-42
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 156 2e-38
sp|P41092|RL27A_DROME 60S ribosomal protein L27a 154 7e-38
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a 143 2e-34
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 142 5e-34
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 141 8e-34
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 180 bits (456), Expect = 2e-45
Identities = 85/137 (62%), Positives = 101/137 (73%)
Frame = +2
Query: 14 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 193
K +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 KLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 194 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 373
+KN++FCP+IN+DK+W+LVSE+T + N EG AP+ID + AGY+KVLG G LPK PVI
Sbjct: 64 KKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQPVI 123
Query: 374 VKAKFFSRQAEEKIKSV 424
VKAKFFSR+AEEKIKSV
Sbjct: 124 VKAKFFSRKAEEKIKSV 140
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 172 bits (435), Expect = 4e-43
Identities = 79/137 (57%), Positives = 99/137 (72%)
Frame = +2
Query: 14 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 193
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 194 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 373
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 374 VKAKFFSRQAEEKIKSV 424
VKAKFFSR+AEEKIK V
Sbjct: 124 VKAKFFSRRAEEKIKGV 140
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 171 bits (434), Expect = 6e-43
Identities = 79/137 (57%), Positives = 100/137 (72%)
Frame = +2
Query: 14 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 193
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63
Query: 194 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 373
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 374 VKAKFFSRQAEEKIKSV 424
VKAKFFSR+AEEKIKSV
Sbjct: 124 VKAKFFSRRAEEKIKSV 140
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 171 bits (434), Expect = 6e-43
Identities = 79/137 (57%), Positives = 100/137 (72%)
Frame = +2
Query: 14 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 193
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGM+HYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHL 63
Query: 194 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 373
++N++FCP++N+DK+W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 374 VKAKFFSRQAEEKIKSV 424
VKAKFFSR+AEEKIKSV
Sbjct: 124 VKAKFFSRRAEEKIKSV 140
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 169 bits (429), Expect = 2e-42
Identities = 79/137 (57%), Positives = 98/137 (71%)
Frame = +2
Query: 14 KAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHL 193
+ +KTRKL NAGG HHHRI+FDK+HPGYFGKVGMRHYHL
Sbjct: 4 RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHL 63
Query: 194 RKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVI 373
++N++FCP++N+DK W+LVSE+T N G AP+ID +++GY+KVLG G LPK PVI
Sbjct: 64 KRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVI 123
Query: 374 VKAKFFSRQAEEKIKSV 424
VKAKFFSR+AEEKIK V
Sbjct: 124 VKAKFFSRRAEEKIKGV 140
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 156 bits (395), Expect = 2e-38
Identities = 77/134 (57%), Positives = 96/134 (71%)
Frame = +2
Query: 20 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 199
+KTRKL NAGGQHHHRI+ DK+HPGYFGKVGMR +HL K
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65
Query: 200 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 379
N +CP++N+D++W+LV E+ + K +AE KAPVIDC+KAGYFKVLG G+LPK P+IVK
Sbjct: 66 NHHYCPTVNVDRLWALVPEE--QKTKVSAE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVK 122
Query: 380 AKFFSRQAEEKIKS 421
AKFFS +AE KIK+
Sbjct: 123 AKFFSHEAENKIKA 136
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
Length = 149
Score = 154 bits (390), Expect = 7e-38
Identities = 75/139 (53%), Positives = 92/139 (66%)
Frame = +2
Query: 2 MSKIKAKKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMR 181
MS IK KKTRKL NAGG HHHRI+FDK+HPGYFGKVGMR
Sbjct: 1 MSNIKRKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMR 60
Query: 182 HYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPK 361
++HLR+ F P IN+DK+WSLV + + + KAPVID +K GY+K+LG G LP
Sbjct: 61 NFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPA 120
Query: 362 VPVIVKAKFFSRQAEEKIK 418
PVIVKAK+FS++AE+KIK
Sbjct: 121 RPVIVKAKYFSKKAEDKIK 139
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
Length = 148
Score = 143 bits (361), Expect = 2e-34
Identities = 68/135 (50%), Positives = 90/135 (66%)
Frame = +2
Query: 20 KKTRKLXXXXXXXXXXXXXXXXXXXXXXNAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRK 199
KKTRKL NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+
Sbjct: 6 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKLGMRNYHLRR 65
Query: 200 NRTFCPSINIDKIWSLVSEKTYETYKDNAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVK 379
N + P+IN+DK+W+LVSE+T Y+++ EGKAPVID +KAGY+K+LG G ++K
Sbjct: 66 NSKWAPAINLDKLWTLVSEQTRSKYQNHPEGKAPVIDIVKAGYYKLLGKGACLTNLSLLK 125
Query: 380 AKFFSRQAEEKIKSV 424
F + E+KIK+V
Sbjct: 126 PSFSLNRLEDKIKAV 140
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 142 bits (357), Expect = 5e-34
Identities = 60/107 (56%), Positives = 86/107 (80%)
Frame = +2
Query: 104 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 283
NAGG HHRI+FDK+HPGYFGK+GMRH+HL +N+ CP+++++KIW+LV E ++
Sbjct: 34 NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93
Query: 284 AEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSV 424
+G APV+D + G+FKVLG+G+LP P+IVKA++FS+ AE+KIK+V
Sbjct: 94 NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAV 140
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 141 bits (355), Expect = 8e-34
Identities = 64/108 (59%), Positives = 82/108 (75%), Gaps = 1/108 (0%)
Frame = +2
Query: 104 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSINIDKIWSLVSEKTYETYKDN 283
NAGGQHH + F FHP YFGK GMR +HL+ N+ +CPSIN+D +WSLV + E YK+
Sbjct: 34 NAGGQHHRKTWFTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQEQYKNA 93
Query: 284 AEG-KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSV 424
G + PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+V
Sbjct: 94 KTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAV 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,891,450
Number of Sequences: 369166
Number of extensions: 824391
Number of successful extensions: 2196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2159
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)