Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_E14
(207 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 90 2e-18
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 90 2e-18
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 89 2e-18
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 88 5e-18
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 88 5e-18
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 88 7e-18
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 79 2e-15
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 79 3e-15
sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 79 3e-15
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 79 4e-15
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 89.7 bits (221), Expect = 2e-18
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = +3
Query: 15 NAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 93 NKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 89.7 bits (221), Expect = 2e-18
Identities = 44/56 (78%), Positives = 48/56 (85%)
Frame = +3
Query: 15 NAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
N EG AP+ID + AGY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 93 NLEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 89.4 bits (220), Expect = 2e-18
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +3
Query: 27 KAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
KAPVIDC+KAGYFKVLG G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 94 KAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 88.2 bits (217), Expect = 5e-18
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = +3
Query: 15 NAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 179
N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 93 NKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 88.2 bits (217), Expect = 5e-18
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +3
Query: 15 NAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 93 NKNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 87.8 bits (216), Expect = 7e-18
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +3
Query: 15 NAEGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
N G AP+ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 93 NKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 79.3 bits (194), Expect = 2e-15
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 YKDNAEGK-APVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
YK+ G+ PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 90 YKNAKTGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 79.0 bits (193), Expect = 3e-15
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 YKDNAEGK-APVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
YK+ G+ PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 90 YKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1
Length = 149
Score = 79.0 bits (193), Expect = 3e-15
Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 YKDNAEGK-APVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
YK+ G+ PVIDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 90 YKNAKVGEEVPVIDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 78.6 bits (192), Expect = 4e-15
Identities = 34/54 (62%), Positives = 47/54 (87%)
Frame = +3
Query: 21 EGKAPVIDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 182
+G APV+D + G+FKVLG+G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 95 DGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,380,430
Number of Sequences: 369166
Number of extensions: 353722
Number of successful extensions: 1027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)