Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_L23
(154 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 82 5e-16
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 81 9e-16
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 79 3e-15
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 79 3e-15
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 79 3e-15
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 79 4e-15
sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4 74 1e-13
sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3 74 1e-13
sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1 74 1e-13
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 70 2e-12
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 81.6 bits (200), Expect = 5e-16
Identities = 37/48 (77%), Positives = 43/48 (89%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
IDC+KAGYFKVLG G+LPK P+IVKAKFFS +AE KIK+ GGAC+LVA
Sbjct: 98 IDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 80.9 bits (198), Expect = 9e-16
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLVA
Sbjct: 101 IDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/47 (80%), Positives = 43/47 (91%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLV 142
ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVLV
Sbjct: 101 IDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/48 (79%), Positives = 43/48 (89%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 101 IDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 79.3 bits (194), Expect = 3e-15
Identities = 38/48 (79%), Positives = 43/48 (89%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
ID +++GY+KVLG G LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 101 IDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 78.6 bits (192), Expect = 4e-15
Identities = 39/48 (81%), Positives = 42/48 (87%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
ID + AGY+KVLG G LPK PVIVKAKFFSR+AEEKIKSVGGACVL A
Sbjct: 101 IDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|Q9BH80|R27A2_ENTHI 60S ribosomal protein L27a-2/4
Length = 149
Score = 73.6 bits (179), Expect = 1e-13
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
IDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 102 IDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI14|R27A3_ENTHI 60S ribosomal protein L27a-3
Length = 149
Score = 73.6 bits (179), Expect = 1e-13
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
IDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 102 IDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|Q9BI06|R27A1_ENTHI 60S ribosomal protein L27a-1
Length = 149
Score = 73.6 bits (179), Expect = 1e-13
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
IDC+K GYFKVLG G LPK PVIV+A++FS +A++KIK+VGGAC L A
Sbjct: 102 IDCVKHGYFKVLGKGFLPKQPVIVRARYFSEKAQQKIKAVGGACELTA 149
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 70.1 bits (170), Expect = 2e-12
Identities = 30/48 (62%), Positives = 42/48 (87%)
Frame = +2
Query: 2 IDCLKAGYFKVLGNGVLPKVPVIVKAKFFSRQAEEKIKSVGGACVLVA 145
+D + G+FKVLG+G+LP P+IVKA++FS+ AE+KIK+VGGAC+LVA
Sbjct: 101 VDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,978,548
Number of Sequences: 369166
Number of extensions: 216092
Number of successful extensions: 638
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 68,354,980
effective HSP length: 23
effective length of database: 64,106,075
effective search space used: 1730864025
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)