Planaria EST Database


DrC_00543

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00543
         (645 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90YV5|RL13_ICTPU  60S ribosomal protein L13                   169   6e-42
sp|Q90Z10|RL13_BRARE  60S ribosomal protein L13                   167   2e-41
sp|P41125|RL13_CHICK  60S ribosomal protein L13 (Breast basi...   162   7e-40
sp|Q9Z313|RL13_CRIGR  60S ribosomal protein L13                   160   3e-39
sp|P47963|RL13_MOUSE  60S ribosomal protein L13 (A52)             160   3e-39
sp|P26373|RL13_HUMAN  60S ribosomal protein L13 (Breast basi...   160   3e-39
sp|P41123|RL13_RAT  60S ribosomal protein L13                     158   1e-38
sp|P41126|RL13_DROME  60S ribosomal protein L13 (BBC1 protei...   153   3e-37
sp|O74175|RL13_SCHPO  60S ribosomal protein L13                   147   2e-35
sp|Q962U1|RL13_SPOFR  60S ribosomal protein L13                   147   2e-35
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
          Length = 211

 Score =  169 bits (428), Expect = 6e-42
 Identities = 102/202 (50%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I N H+HKDWQK V+T FNQPARKLRR  AR+AKA  +APRP+    RP VR
Sbjct: 1   MAPSRNGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RYN KVR GRGF+L+ELK AGIN+  AR IGI VD RRRN S E   VNVQRLK Y
Sbjct: 61  CPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             AR+ TE EKKF AF
Sbjct: 121 RSKLILFPRKVSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
             LR AR  A+  G  AK  +E
Sbjct: 180 ANLRMARANARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
          Length = 211

 Score =  167 bits (423), Expect = 2e-41
 Identities = 99/202 (49%), Positives = 116/202 (57%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I N H+HKDWQK V+T FNQPARK+RR  AR+AKA  +APRP+    RP VR
Sbjct: 1   MAPSRNGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGF+L+ELK AGIN+  AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             ARV +E EK F AF
Sbjct: 121 RTKLIIFPRKAAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  162 bits (410), Expect = 7e-40
 Identities = 97/202 (48%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP+    RP VR
Sbjct: 1   MAPSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q ++G             ARV +E EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
          Length = 211

 Score =  160 bits (405), Expect = 3e-39
 Identities = 97/202 (48%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VR
Sbjct: 1   MAPSRNGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
          Length = 211

 Score =  160 bits (404), Expect = 3e-39
 Identities = 97/202 (48%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VR
Sbjct: 1   MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  160 bits (404), Expect = 3e-39
 Identities = 96/202 (47%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  +   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VR
Sbjct: 1   MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
          Length = 211

 Score =  158 bits (400), Expect = 1e-38
 Identities = 96/202 (47%), Positives = 112/202 (55%), Gaps = 1/202 (0%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
           M  SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VR
Sbjct: 1   MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60

Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           CPT RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y
Sbjct: 61  CPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEY 120

Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
                                     A Q +TG             AR  TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAF 179

Query: 548 HALRQARRRAKTVGKVAKPKEE 613
            +LR AR  A+  G  AK  +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
          Length = 218

 Score =  153 bits (387), Expect = 3e-37
 Identities = 92/197 (46%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
 Frame = +2

Query: 26  HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 202
           +N I N HYHK WQ+ VKT FNQPARK+RR   R  KA AV PRP     RP VRCPT R
Sbjct: 5   NNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIR 64

Query: 203 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 382
           Y+ K+R GRGF+L+ELK AGI  N+A+ IGI VD RR+N SLE +Q N+QRLK+Y     
Sbjct: 65  YHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLI 124

Query: 383 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 562
                             C  A Q                  R  T+ EKKF AF  LR+
Sbjct: 125 LFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRK 184

Query: 563 ARRRAKTVGKVAKPKEE 613
           AR  A+ VG  AK  +E
Sbjct: 185 ARTDARLVGIRAKRAKE 201
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
          Length = 208

 Score =  147 bits (372), Expect = 2e-35
 Identities = 72/119 (60%), Positives = 87/119 (73%)
 Frame = +2

Query: 11  MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRC 190
           M +    Q+ N H+HKDWQ+ VKT FNQP RKLRR  AR+ KA  +APRP++  RPAV+ 
Sbjct: 1   MAIHVKGQLPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKP 60

Query: 191 PTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
           PT RYNMKVR GRGF+L+ELK AG++R  A  IGI VDHRRRN S E  Q NV+R+K Y
Sbjct: 61  PTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
          Length = 219

 Score =  147 bits (372), Expect = 2e-35
 Identities = 91/193 (47%), Positives = 106/193 (54%), Gaps = 1/193 (0%)
 Frame = +2

Query: 26  HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 202
           +N I N H+HKDWQ+ VKT FNQPAR+ RR   R  KA AVAPRP     RP VRCPT R
Sbjct: 5   NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIR 64

Query: 203 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 382
           Y+ KVR GRGF+L E++ AG+N  +AR IGI VD RRRN S+E  QVNVQRLK+Y     
Sbjct: 65  YHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLI 124

Query: 383 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 562
                                   ++ G             AR  TE EK F A+  LR 
Sbjct: 125 LFPKGKKVLKGEANEEE--RKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRG 182

Query: 563 ARRRAKTVGKVAK 601
           AR  AK VG  AK
Sbjct: 183 ARSIAKLVGIRAK 195
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,466,273
Number of Sequences: 369166
Number of extensions: 1189449
Number of successful extensions: 3429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3406
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00543

  1. Dr_sW_014_A09
  2. Dr_sW_004_H12
  3. Dr_sW_010_J03
  4. Dr_sW_019_O08
  5. Dr_sW_002_H11
  6. Dr_sW_001_N07
  7. Dr_sW_006_M19
  8. Dr_sW_022_C20
  9. Dr_sW_006_P05
  10. Dr_sW_010_A06
  11. Dr_sW_016_K03
  12. Dr_sW_017_E23
  13. Dr_sW_005_F23
  14. Dr_sW_017_B01
  15. Dr_sW_017_I20
  16. Dr_sW_006_A20
  17. Dr_sW_005_M22
  18. Dr_sW_002_O22
  19. Dr_sW_022_D24
  20. Dr_sW_002_A19