Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_M19
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 152 5e-37
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 150 2e-36
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 148 1e-35
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 146 5e-35
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 146 5e-35
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 145 6e-35
sp|P41123|RL13_RAT 60S ribosomal protein L13 144 2e-34
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 140 3e-33
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 139 8e-33
sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 133 3e-31
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 152 bits (385), Expect = 5e-37
Identities = 94/186 (50%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQK V+T FNQPARKLRR AR+AKA +APRP+ RP VRCPT RYN KVR GRGF
Sbjct: 17 DWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 77 TLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG AR+ TE EKKF AF LR AR A+ G
Sbjct: 137 GDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 150 bits (380), Expect = 2e-36
Identities = 91/186 (48%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQK V+T FNQPARK+RR AR+AKA +APRP+ RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 TLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG ARV +E EK F AF +LR AR A+ G
Sbjct: 137 GDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 148 bits (373), Expect = 1e-35
Identities = 90/186 (48%), Positives = 106/186 (56%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ V T FNQPARK+RR AR+AKA +APRP+ RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
SL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 SLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q ++G ARV +E EK F AF +LR AR A+ G
Sbjct: 137 GDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 146 bits (368), Expect = 5e-35
Identities = 90/186 (48%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
SL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 SLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 137 GDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 146 bits (368), Expect = 5e-35
Identities = 90/186 (48%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
SL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 SLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 137 GDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 145 bits (367), Expect = 6e-35
Identities = 90/186 (48%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
SL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 SLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 137 GDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 144 bits (363), Expect = 2e-34
Identities = 89/186 (47%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR GRGF
Sbjct: 17 DWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGF 76
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
SL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 77 SLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
A Q +TG AR TE EK F AF +LR AR A+ G
Sbjct: 137 GDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
Query: 566 AKPKEE 583
AK +E
Sbjct: 196 AKRAKE 201
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 140 bits (352), Expect = 3e-33
Identities = 82/168 (48%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Frame = +2
Query: 32 WQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFS 208
WQ MVKT FNQPARK RR ARKAKA +APRP RP V CPT RYNMKVR GRGFS
Sbjct: 17 WQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFS 76
Query: 209 LDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXXX 388
L E++ AG+N +AR IGI VDHRRRN+S+EG Q NV RLK Y
Sbjct: 77 LQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAM 136
Query: 389 XXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 532
A Q + A PT +E ++ AFHA+RQ
Sbjct: 137 DAKADEVKKATQ-LRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 139 bits (349), Expect = 8e-33
Identities = 85/185 (45%), Positives = 101/185 (54%), Gaps = 1/185 (0%)
Frame = +2
Query: 32 WQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFS 208
WQ+ VKT FNQPARK+RR R KA AV PRP RP VRCPT RY+ K+R GRGF+
Sbjct: 17 WQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFT 76
Query: 209 LDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXXX 388
L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 77 LEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAG 136
Query: 389 XXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKVA 568
C A Q R T+ EKKF AF LR+AR A+ VG A
Sbjct: 137 ESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRA 196
Query: 569 KPKEE 583
K +E
Sbjct: 197 KRAKE 201
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
Length = 219
Score = 133 bits (335), Expect = 3e-31
Identities = 85/182 (46%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Frame = +2
Query: 29 DWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGF 205
DWQ+ VKT FNQPAR+ RR R KA AVAPRP RP VRCPT RY+ KVR GRGF
Sbjct: 16 DWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGF 75
Query: 206 SLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXXX 385
+L E++ AG+N +AR IGI VD RRRN S+E QVNVQRLK+Y
Sbjct: 76 TLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFPKGKKVLKG 135
Query: 386 XXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGKV 565
++ G AR TE EK F A+ LR AR AK VG
Sbjct: 136 EANEEE--RKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
Query: 566 AK 571
AK
Sbjct: 194 AK 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,984,994
Number of Sequences: 369166
Number of extensions: 1126474
Number of successful extensions: 3258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3235
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)