Planarian EST Database


Dr_sW_022_C20

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_022_C20
         (607 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90YV5|RL13_ICTPU  60S ribosomal protein L13                   163   3e-40
sp|Q90Z10|RL13_BRARE  60S ribosomal protein L13                   161   1e-39
sp|P41125|RL13_CHICK  60S ribosomal protein L13 (Breast basi...   157   2e-38
sp|P26373|RL13_HUMAN  60S ribosomal protein L13 (Breast basi...   155   8e-38
sp|Q9Z313|RL13_CRIGR  60S ribosomal protein L13                   155   8e-38
sp|P47963|RL13_MOUSE  60S ribosomal protein L13 (A52)             155   1e-37
sp|P41123|RL13_RAT  60S ribosomal protein L13                     153   3e-37
sp|P41126|RL13_DROME  60S ribosomal protein L13 (BBC1 protei...   149   4e-36
sp|Q95043|RL13_SCHMA  60S ribosomal protein L13 (BBC1 protei...   145   6e-35
sp|O74175|RL13_SCHPO  60S ribosomal protein L13                   144   1e-34
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
          Length = 211

 Score =  163 bits (413), Expect = 3e-40
 Identities = 98/192 (51%), Positives = 110/192 (57%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3   NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 179
           N H+HKDWQK V+T FNQPARKLRR  AR+AKA  +APRP+    RP VRCPT RYN KV
Sbjct: 11  NPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKV 70

Query: 180 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 359
           R GRGF+L+ELK AGIN+  AR IGI VD RRRN S E   VNVQRLK Y          
Sbjct: 71  RAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRK 130

Query: 360 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 539
                           A Q +TG             AR+ TE EKKF AF  LR AR  A
Sbjct: 131 VSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANA 189

Query: 540 KTVGKVAKPKEE 575
           +  G  AK  +E
Sbjct: 190 RLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
          Length = 211

 Score =  161 bits (408), Expect = 1e-39
 Identities = 95/192 (49%), Positives = 111/192 (57%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3   NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 179
           N H+HKDWQK V+T FNQPARK+RR  AR+AKA  +APRP+    RP VRCPT RY+ KV
Sbjct: 11  NPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKV 70

Query: 180 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 359
           R GRGF+L+ELK AGIN+  AR IGI VD RRRN S E  Q NVQRLK+Y          
Sbjct: 71  RAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRK 130

Query: 360 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 539
                           A Q +TG             ARV +E EK F AF +LR AR  A
Sbjct: 131 AAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANA 189

Query: 540 KTVGKVAKPKEE 575
           +  G  AK  +E
Sbjct: 190 RLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  157 bits (397), Expect = 2e-38
 Identities = 93/190 (48%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP+    RP VRCPT RY+ KVR 
Sbjct: 13  HFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRA 72

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E  Q NVQRLK+Y            
Sbjct: 73  GRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 545
                         A Q ++G             ARV +E EK F AF +LR AR  A+ 
Sbjct: 133 APKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARL 191

Query: 546 VGKVAKPKEE 575
            G  AK  +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  155 bits (392), Expect = 8e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT RY+ KVR 
Sbjct: 13  HFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y            
Sbjct: 73  GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 545
                         A Q +TG             ARV TE EK F AF +LR AR  A+ 
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191

Query: 546 VGKVAKPKEE 575
            G  AK  +E
Sbjct: 192 FGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
          Length = 211

 Score =  155 bits (392), Expect = 8e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT RY+ KVR 
Sbjct: 13  HFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y            
Sbjct: 73  GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 545
                         A Q +TG             ARV TE EK F AF +LR AR  A+ 
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191

Query: 546 VGKVAKPKEE 575
            G  AK  +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
          Length = 211

 Score =  155 bits (391), Expect = 1e-37
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT RY+ KVR 
Sbjct: 13  HFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y            
Sbjct: 73  GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 545
                         A Q +TG             ARV TE EK F AF +LR AR  A+ 
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191

Query: 546 VGKVAKPKEE 575
            G  AK  +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
          Length = 211

 Score =  153 bits (387), Expect = 3e-37
 Identities = 92/190 (48%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT RY+ KVR 
Sbjct: 13  HFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y            
Sbjct: 73  GRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 545
                         A Q +TG             AR  TE EK F AF +LR AR  A+ 
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARL 191

Query: 546 VGKVAKPKEE 575
            G  AK  +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
          Length = 218

 Score =  149 bits (377), Expect = 4e-36
 Identities = 90/192 (46%), Positives = 106/192 (55%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3   NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 179
           N HYHK WQ+ VKT FNQPARK+RR   R  KA AV PRP     RP VRCPT RY+ K+
Sbjct: 10  NQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKL 69

Query: 180 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 359
           R GRGF+L+ELK AGI  N+A+ IGI VD RR+N SLE +Q N+QRLK+Y          
Sbjct: 70  RAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPIN 129

Query: 360 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 539
                        C  A Q                  R  T+ EKKF AF  LR+AR  A
Sbjct: 130 EKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDA 189

Query: 540 KTVGKVAKPKEE 575
           + VG  AK  +E
Sbjct: 190 RLVGIRAKRAKE 201
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
          Length = 184

 Score =  145 bits (367), Expect = 6e-35
 Identities = 84/173 (48%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
 Frame = +3

Query: 9   HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 185
           H+ K WQ MVKT FNQPARK RR  ARKAKA  +APRP     RP V CPT RYNMKVR 
Sbjct: 12  HFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRS 71

Query: 186 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 365
           GRGFSL E++ AG+N  +AR IGI VDHRRRN+S+EG Q NV RLK Y            
Sbjct: 72  GRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPA 131

Query: 366 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 524
                         A Q +               A  PT +E ++ AFHA+RQ
Sbjct: 132 KPQAMDAKADEVKKATQ-LRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
          Length = 208

 Score =  144 bits (364), Expect = 1e-34
 Identities = 70/109 (64%), Positives = 83/109 (76%)
 Frame = +3

Query: 3   NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRCPTNRYNMKVR 182
           N H+HKDWQ+ VKT FNQP RKLRR  AR+ KA  +APRP++  RPAV+ PT RYNMKVR
Sbjct: 11  NAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNMKVR 70

Query: 183 LGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 329
            GRGF+L+ELK AG++R  A  IGI VDHRRRN S E  Q NV+R+K Y
Sbjct: 71  AGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,994,683
Number of Sequences: 369166
Number of extensions: 1097035
Number of successful extensions: 3167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3144
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)