Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A19
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 56 2e-08
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 56 2e-08
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 56 2e-08
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 56 2e-08
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 56 2e-08
sp|P41123|RL13_RAT 60S ribosomal protein L13 55 6e-08
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 53 2e-07
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 53 2e-07
sp|O46157|RL13_LUMRU 60S ribosomal protein L13 50 2e-06
sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 49 5e-06
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/109 (38%), Positives = 51/109 (46%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y +++ EE A Q +TG
Sbjct: 94 IGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
ARV TE EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/109 (38%), Positives = 51/109 (46%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y +++ EE A Q +TG
Sbjct: 94 IGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
ARV TE EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/109 (38%), Positives = 51/109 (46%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y ++T EE A Q +TG
Sbjct: 94 IGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
ARV +E EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 56.2 bits (134), Expect = 2e-08
Identities = 43/109 (39%), Positives = 50/109 (45%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + VNVQRLK Y ++T EE A Q +TG
Sbjct: 94 IGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
AR+ TE EKKF AF LR AR A+ G AK +E
Sbjct: 153 PVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 56.2 bits (134), Expect = 2e-08
Identities = 42/109 (38%), Positives = 51/109 (46%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y +++ EE A Q +TG
Sbjct: 94 IGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
ARV TE EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 54.7 bits (130), Expect = 6e-08
Identities = 41/109 (37%), Positives = 50/109 (45%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y +++ EE A Q +TG
Sbjct: 94 IGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQ-LTG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
AR TE EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 53.1 bits (126), Expect = 2e-07
Identities = 39/109 (35%), Positives = 49/109 (44%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RR+N +Q N+QRLK+Y E++ EEC A Q
Sbjct: 93 IGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGP 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
R T+ EKKF AF LR+AR A+ VG AK +E
Sbjct: 153 VLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 53.1 bits (126), Expect = 2e-07
Identities = 40/109 (36%), Positives = 51/109 (46%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN + Q NVQRLK+Y +++ EE A Q ++G
Sbjct: 94 IGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQ-LSG 152
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
ARV +E EK F AF +LR AR A+ G AK +E
Sbjct: 153 PVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIRAKRAKE 201
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13
Length = 188
Score = 50.1 bits (118), Expect = 2e-06
Identities = 39/109 (35%), Positives = 47/109 (43%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN Q+NVQRLK+Y + T EE A Q + G
Sbjct: 70 IGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQ-LKG 128
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAKPKEE 327
AR T+ E+K F LRQAR + GK AK +E
Sbjct: 129 KLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKRAKKAKE 177
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
Length = 219
Score = 48.5 bits (114), Expect = 5e-06
Identities = 40/105 (38%), Positives = 44/105 (41%)
Frame = +1
Query: 1 IGIYVDHRRRNLFS*RKQVNVQRLKQYXXXXXXXXXXXXXXXXTENTTEECANAVQRVTG 180
IGI VD RRRN QVNVQRLK+Y N EE ++ G
Sbjct: 93 IGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFPKGKKVLKGEAN--EEERKLATQLRG 150
Query: 181 XXXXXXXXXXXXFARVPTEAEKKFGAFHALRQARRRAKTVGKVAK 315
AR TE EK F A+ LR AR AK VG AK
Sbjct: 151 PLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIRAK 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,519,790
Number of Sequences: 369166
Number of extensions: 548052
Number of successful extensions: 1509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)