Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_O08
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 76 3e-14
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 75 4e-14
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 75 4e-14
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 75 7e-14
sp|O46157|RL13_LUMRU 60S ribosomal protein L13 75 7e-14
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 74 9e-14
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 74 9e-14
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 74 9e-14
sp|P41123|RL13_RAT 60S ribosomal protein L13 73 3e-13
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 66 2e-11
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 75.9 bits (185), Expect = 3e-14
Identities = 52/127 (40%), Positives = 62/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q ++G ARV +E EK F AF +LR AR A+ G
Sbjct: 136 KGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 75.5 bits (184), Expect = 4e-14
Identities = 52/127 (40%), Positives = 61/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
F+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG ARV +E EK F AF +LR AR A+ G
Sbjct: 136 KGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 75.5 bits (184), Expect = 4e-14
Identities = 53/127 (41%), Positives = 60/127 (47%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
F+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 76 FTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG AR+ TE EKKF AF LR AR A+ G
Sbjct: 136 KGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 74.7 bits (182), Expect = 7e-14
Identities = 49/127 (38%), Positives = 61/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
F+L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 75 FTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIR 134
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
C A Q R T+ EKKF AF LR+AR A+ VG
Sbjct: 135 AGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13
Length = 188
Score = 74.7 bits (182), Expect = 7e-14
Identities = 51/127 (40%), Positives = 60/127 (47%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSLDELK AGIN+ AR IGI VD RRRN S+E Q+NVQRLK+Y
Sbjct: 52 FSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPN 111
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q + G AR T+ E+K F LRQAR + GK
Sbjct: 112 KGDATEEEMKLATQ-LKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGK 170
Query: 363 VAKPKEE 383
AK +E
Sbjct: 171 RAKKAKE 177
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 74.3 bits (181), Expect = 9e-14
Identities = 52/127 (40%), Positives = 61/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 136 KGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 74.3 bits (181), Expect = 9e-14
Identities = 52/127 (40%), Positives = 61/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 136 KGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 74.3 bits (181), Expect = 9e-14
Identities = 52/127 (40%), Positives = 61/127 (48%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG ARV TE EK F AF +LR AR A+ G
Sbjct: 136 KGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 72.8 bits (177), Expect = 3e-13
Identities = 51/127 (40%), Positives = 60/127 (47%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 76 FSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPK 135
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKTVGK 362
A Q +TG AR TE EK F AF +LR AR A+ G
Sbjct: 136 KGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGI 194
Query: 363 VAKPKEE 383
AK +E
Sbjct: 195 RAKRAKE 201
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 66.2 bits (160), Expect = 2e-11
Identities = 41/110 (37%), Positives = 52/110 (47%)
Frame = +3
Query: 3 FSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXXXXX 182
FSL E++ AG+N +AR IGI VDHRRRN+S+EG Q NV RLK Y
Sbjct: 75 FSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQ 134
Query: 183 XXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 332
A Q + A PT +E ++ AFHA+RQ
Sbjct: 135 AMDAKADEVKKATQ-LRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,048,544
Number of Sequences: 369166
Number of extensions: 646980
Number of successful extensions: 1780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1774
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)