Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_N07
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 160 2e-39
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 159 7e-39
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 154 2e-37
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 152 8e-37
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 151 1e-36
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 151 1e-36
sp|P41123|RL13_RAT 60S ribosomal protein L13 150 3e-36
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 149 5e-36
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 144 2e-34
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 142 5e-34
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 160 bits (406), Expect = 2e-39
Identities = 97/194 (50%), Positives = 110/194 (56%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I N H+HKDWQK V+T FNQPARKLR AR+AKA +APRP+ RP VRCPT RYN
Sbjct: 9 ILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNT 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 69 KVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q +TG AR+ T+ EKKF AF LR AR
Sbjct: 129 RKVSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 159 bits (401), Expect = 7e-39
Identities = 94/194 (48%), Positives = 111/194 (57%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I N H+HKDWQK V+T FNQPARK+R AR+AKA +APRP+ RP VRCPT RY+
Sbjct: 9 ILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHT 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 69 KVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q +TG ARV ++ EK F AF +LR AR
Sbjct: 129 RKAAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 154 bits (388), Expect = 2e-37
Identities = 92/194 (47%), Positives = 110/194 (56%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I H+HKDWQ+ V T FNQPARK+R AR+AKA +APRP+ RP VRCPT RY+
Sbjct: 9 ILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHK 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 69 KVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q ++G ARV ++ EK F AF +LR AR
Sbjct: 129 RKPSAPKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 152 bits (383), Expect = 8e-37
Identities = 92/194 (47%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I H+HKDWQ+ V T FNQPARK+R AR+AKA +APRP RP VRCPT RY+
Sbjct: 9 ILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHT 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 69 KVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q +TG ARV T+ EK F AF +LR AR
Sbjct: 129 RKPSAPKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 151 bits (382), Expect = 1e-36
Identities = 92/194 (47%), Positives = 108/194 (55%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I H+HKDWQ+ V T FNQPARK+R AR+AKA +APRP RP VRCPT RY+
Sbjct: 9 ILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHT 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 69 KVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q +TG ARV T+ EK F AF +LR AR
Sbjct: 129 RKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 151 bits (382), Expect = 1e-36
Identities = 91/190 (47%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 17 HYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 193
H+HKDWQ+ V T FNQPARK+R AR+AKA +APRP RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72
Query: 194 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 373
GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 374 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQARTRAKT 553
A Q +TG ARV T+ EK F AF +LR AR A+
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191
Query: 554 VGKVAKPKEE 583
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 150 bits (378), Expect = 3e-36
Identities = 91/194 (46%), Positives = 107/194 (55%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I H+HKDWQ+ V T FNQPARK+R AR+AKA +APRP RP VRCPT RY+
Sbjct: 9 ILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHT 68
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 69 KVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFP 128
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
A Q +TG AR T+ EK F AF +LR AR
Sbjct: 129 RKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARA 187
Query: 542 RAKTVGKVAKPKEE 583
A+ G AK +E
Sbjct: 188 NARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 149 bits (376), Expect = 5e-36
Identities = 91/194 (46%), Positives = 106/194 (54%), Gaps = 1/194 (0%)
Frame = +2
Query: 5 IANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNM 181
I N HYHK WQ+ VKT FNQPARK+R R KA AV PRP RP VRCPT RY+
Sbjct: 8 IPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHT 67
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXX 361
K+R GRGF+L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 68 KLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFP 127
Query: 362 XXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQART 541
C A Q R T EKKF AF LR+ART
Sbjct: 128 INEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKART 187
Query: 542 RAKTVGKVAKPKEE 583
A+ VG AK +E
Sbjct: 188 DARLVGIRAKRAKE 201
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 144 bits (362), Expect = 2e-34
Identities = 70/112 (62%), Positives = 84/112 (75%)
Frame = +2
Query: 2 QIANVHYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLKKFRPAVRCPTNRYNM 181
Q+ N H+HKDWQ+ VKT FNQP RKLR AR+ KA +APRP++ RPAV+ PT RYNM
Sbjct: 8 QLPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNM 67
Query: 182 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 337
KVR GRGF+L+ELK AG++R A IGI VDHRRRN S E Q NV+R+K Y
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 142 bits (359), Expect = 5e-34
Identities = 83/173 (47%), Positives = 96/173 (55%), Gaps = 1/173 (0%)
Frame = +2
Query: 17 HYHKDWQKMVKTNFNQPARKLRISNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 193
H+ K WQ MVKT FNQPARK R ARKAKA +APRP RP V CPT RYNMKVR
Sbjct: 12 HFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRS 71
Query: 194 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 373
GRGFSL E++ AG+N +AR IGI VDHRRRN+S+EG Q NV RLK Y
Sbjct: 72 GRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPA 131
Query: 374 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTDAEKKFGAFHALRQ 532
A Q + A PT +E ++ AFHA+RQ
Sbjct: 132 KPQAMDAKADEVKKATQ-LRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,285,468
Number of Sequences: 369166
Number of extensions: 1114482
Number of successful extensions: 3235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3209
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)