Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_H11
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 91 2e-18
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 89 7e-18
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 88 2e-17
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 87 3e-17
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 87 4e-17
sp|P91128|RL13_CAEEL 60S ribosomal protein L13 84 4e-16
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 82 9e-16
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 82 9e-16
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 82 1e-15
sp|P41123|RL13_RAT 60S ribosomal protein L13 82 1e-15
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 91.3 bits (225), Expect = 2e-18
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 RHNQIANGPFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPT 179
R+ I N P + QK V+T FNQPARKLRR AR+AKA +A RP+ RP VRCPT
Sbjct: 5 RNGMILN-PHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPT 63
Query: 180 NRYNMKVRLGRGFSFVELKEAGFNRNYARQI 272
RYN KVR GRGF+ ELK AG N+ AR I
Sbjct: 64 VRYNTKVRAGRGFTLEELKAAGINKRVARTI 94
Score = 37.4 bits (85), Expect = 0.033
Identities = 24/52 (46%), Positives = 27/52 (51%)
Frame = +1
Query: 217 FLLLNLKKLVSTEIMQDKFGIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
F L LK + + GI VD RRRN S E VNVQRLK Y + L F
Sbjct: 76 FTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILF 127
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 89.4 bits (220), Expect = 7e-18
Identities = 50/91 (54%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 RHNQIANGPFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPT 179
R+ I N P + QK V+T FNQPARK+RR AR+AKA +A RP+ RP VRCPT
Sbjct: 5 RNGMILN-PHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPT 63
Query: 180 NRYNMKVRLGRGFSFVELKEAGFNRNYARQI 272
RY+ KVR GRGF+ ELK AG N+ AR I
Sbjct: 64 IRYHTKVRAGRGFTLEELKAAGINKKVARTI 94
Score = 39.3 bits (90), Expect = 0.009
Identities = 24/52 (46%), Positives = 27/52 (51%)
Frame = +1
Query: 217 FLLLNLKKLVSTEIMQDKFGIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
F L LK + + GI VD RRRN S E Q NVQRLK+Y L F
Sbjct: 76 FTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIF 127
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 88.2 bits (217), Expect = 2e-17
Identities = 48/87 (55%), Positives = 58/87 (66%)
Frame = +3
Query: 12 QIANGPFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLKKFRPAVRCPTNRYN 191
Q+ N F + Q+ VKT FNQP RKLRR AR+ KA +A RP++ RPAV+ PT RYN
Sbjct: 8 QLPNAHFH-KDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYN 66
Query: 192 MKVRLGRGFSFVELKEAGFNRNYARQI 272
MKVR GRGF+ ELK AG +R A I
Sbjct: 67 MKVRAGRGFTLEELKAAGVSRRVASTI 93
Score = 39.3 bits (90), Expect = 0.009
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 217 FLLLNLKKLVSTEIMQDKFGIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
F L LK + + GI VDHRRRN S E Q NV+R+K Y+ +L F
Sbjct: 75 FTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVF 126
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 87.4 bits (215), Expect = 3e-17
Identities = 48/76 (63%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Frame = +3
Query: 48 QKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVRLGRGFSF 224
Q MVKT FNQPARK RR ARKAKA +A RP RP V CPT RYNMKVR GRGFS
Sbjct: 18 QFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSL 77
Query: 225 VELKEAGFNRNYARQI 272
E++ AG N +AR I
Sbjct: 78 QEVRAAGLNPKFARTI 93
Score = 40.4 bits (93), Expect = 0.004
Identities = 21/33 (63%), Positives = 22/33 (66%)
Frame = +1
Query: 274 GIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
GI VDHRRRN S+EG Q NV RLK Y L F
Sbjct: 94 GIAVDHRRRNVSVEGLQRNVARLKAYKAKLILF 126
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 87.0 bits (214), Expect = 4e-17
Identities = 47/83 (56%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 PFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVR 203
P + Q+ V T FNQPARK+RR AR+AKA +A RP+ RP VRCPT RY+ KVR
Sbjct: 12 PHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVR 71
Query: 204 LGRGFSFVELKEAGFNRNYARQI 272
GRGFS ELK AG N+ +AR I
Sbjct: 72 AGRGFSLEELKLAGINKRFARTI 94
Score = 38.1 bits (87), Expect = 0.019
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1
Query: 274 GIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
GI VD RRRN S E Q NVQRLK+Y + L F
Sbjct: 95 GISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
>sp|P91128|RL13_CAEEL 60S ribosomal protein L13
Length = 207
Score = 83.6 bits (205), Expect = 4e-16
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = +3
Query: 3 RHNQIANGPFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLKKF-RPAVRCPT 179
R NQ+ + K +KT F+QPARKLRR R+AKA+ +A RP+ R VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 180 NRYNMKVRLGRGFSFVELKEAGFNRNYARQI 272
RYN K RLGRGFS ELK AG ++ AR I
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTI 94
Score = 33.9 bits (76), Expect = 0.36
Identities = 28/91 (30%), Positives = 42/91 (46%)
Frame = +2
Query: 311 LKENKSMFND*SNMLTIFLVLPKNSLKPKKTENTTEECANAVQRVTGRNYSNQKITFVFE 490
LK N + L +F PK + PKK +++ EE A Q + T F+
Sbjct: 110 LKANADRLKEYKAKLILF---PKKASAPKKGDSSAEELKVAAQ--LRGDVLPLSHTITFD 164
Query: 491 SARVPTEAEKEILELFHALRQARRRAKTVGK 583
R T+AE+++ E+F LR+ R K GK
Sbjct: 165 EPRQVTDAERKV-EIFRLLRKERADKKYRGK 194
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 82.4 bits (202), Expect = 9e-16
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 PFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVR 203
P + Q+ V T FNQPARK+RR AR+AKA +A RP RP VRCPT RY+ KVR
Sbjct: 12 PHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVR 71
Query: 204 LGRGFSFVELKEAGFNRNYARQI 272
GRGFS EL+ AG ++ AR I
Sbjct: 72 AGRGFSLEELRVAGIHKKVARTI 94
Score = 38.1 bits (87), Expect = 0.019
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1
Query: 274 GIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
GI VD RRRN S E Q NVQRLK+Y + L F
Sbjct: 95 GISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 82.4 bits (202), Expect = 9e-16
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 PFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVR 203
P + Q+ V T FNQPARK+RR AR+AKA +A RP RP VRCPT RY+ KVR
Sbjct: 12 PHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVR 71
Query: 204 LGRGFSFVELKEAGFNRNYARQI 272
GRGFS EL+ AG ++ AR I
Sbjct: 72 AGRGFSLEELRVAGIHKKVARTI 94
Score = 38.1 bits (87), Expect = 0.019
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1
Query: 274 GIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
GI VD RRRN S E Q NVQRLK+Y + L F
Sbjct: 95 GISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 82.0 bits (201), Expect = 1e-15
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 PFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVR 203
P + Q+ V T FNQPARK+RR AR+AKA +A RP RP VRCPT RY+ KVR
Sbjct: 12 PHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVR 71
Query: 204 LGRGFSFVELKEAGFNRNYARQI 272
GRGFS EL+ AG ++ AR I
Sbjct: 72 AGRGFSLEELRVAGIHKKVARTI 94
Score = 38.1 bits (87), Expect = 0.019
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +1
Query: 274 GIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
GI VD RRRN S E Q NVQRLK+Y + L F
Sbjct: 95 GISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 82.0 bits (201), Expect = 1e-15
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 PFTTRTGQKMVKTNFNQPARKLRRSNARKAKAIAVALRPLK-KFRPAVRCPTNRYNMKVR 203
P + Q+ V T FNQPARK+RR AR+AKA +A RP RP VRCPT RY+ KVR
Sbjct: 12 PHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVR 71
Query: 204 LGRGFSFVELKEAGFNRNYARQI 272
GRGFS EL+ AG ++ AR I
Sbjct: 72 AGRGFSLEELRVAGIHKKMARTI 94
Score = 38.5 bits (88), Expect = 0.015
Identities = 21/38 (55%), Positives = 23/38 (60%)
Frame = +1
Query: 259 MQDKFGIYVDHRRRNFSLEGKQVNVQRLKQYVNNLFGF 372
M GI VD RRRN S E Q NVQRLK+Y + L F
Sbjct: 90 MARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILF 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,227,401
Number of Sequences: 369166
Number of extensions: 1218852
Number of successful extensions: 3529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3512
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)