Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_D24
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 136 4e-32
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 135 6e-32
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 134 2e-31
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 134 2e-31
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 132 6e-31
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 132 6e-31
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 132 6e-31
sp|P41123|RL13_RAT 60S ribosomal protein L13 130 2e-30
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 127 3e-29
sp|O46157|RL13_LUMRU 60S ribosomal protein L13 127 3e-29
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 136 bits (342), Expect = 4e-32
Identities = 87/181 (48%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V+T FNQPARK+ R AR+ KA +APRP+ RP VRCPT RYN KVR GRGF+L+EL
Sbjct: 22 VRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
K AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 82 KAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTE 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG AR+ TE EKKF AF LR AR A+ G AK +
Sbjct: 142 EEVKMATQL-TGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 135 bits (341), Expect = 6e-32
Identities = 85/181 (46%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V+T FNQPARK+ R AR+ KA +APRP+ RP VRCPT RY+ KVR GRGF+L+EL
Sbjct: 22 VRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
K AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 KAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTE 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG ARV +E EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKMATQL-TGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 134 bits (337), Expect = 2e-31
Identities = 84/181 (46%), Positives = 98/181 (54%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
VKT FNQPARKV R R +KA AV PRP RP VRCPT RY+ K+R GRGF+L+EL
Sbjct: 21 VKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEEL 80
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
K AGI N+A+ IGI VD RR+N SLE Q N+QRLK+Y
Sbjct: 81 KGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSL 140
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
C A Q R T+ EKKF AF LR+ART A+ VG AK +
Sbjct: 141 EECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 134 bits (337), Expect = 2e-31
Identities = 85/181 (46%), Positives = 99/181 (54%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V T FNQPARK+ R AR+ KA +APRP+ RP VRCPT RY+ KVR GRGFSL+EL
Sbjct: 22 VATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
K AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 KLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSP 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q +G ARV +E EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKMATQL-SGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 132 bits (332), Expect = 6e-31
Identities = 85/181 (46%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V T FNQPARK+ R AR+ KA +APRP RP VRCPT RY+ KVR GRGFSL+EL
Sbjct: 22 VDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 RVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSA 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG ARV TE EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKLATQL-TGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 132 bits (332), Expect = 6e-31
Identities = 85/181 (46%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V T FNQPARK+ R AR+ KA +APRP RP VRCPT RY+ KVR GRGFSL+EL
Sbjct: 22 VATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 RVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSA 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG ARV TE EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKLATQL-TGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 132 bits (332), Expect = 6e-31
Identities = 85/181 (46%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V T FNQPARK+ R AR+ KA +APRP RP VRCPT RY+ KVR GRGFSL+EL
Sbjct: 22 VDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 RVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSA 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG ARV TE EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKLATQL-TGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 130 bits (328), Expect = 2e-30
Identities = 84/181 (46%), Positives = 96/181 (53%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 VKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDEL 180
V T FNQPARK+ R AR+ KA +APRP RP VRCPT RY+ KVR GRGFSL+EL
Sbjct: 22 VDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEEL 81
Query: 181 KEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXX 360
+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 82 RVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSA 141
Query: 361 XXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpre 540
A Q TG AR TE EK F AF +LR AR A+ G AK +
Sbjct: 142 EELKLATQL-TGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIRAKRAK 200
Query: 541 E 543
E
Sbjct: 201 E 201
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 127 bits (318), Expect = 3e-29
Identities = 77/165 (46%), Positives = 89/165 (53%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 MVKTNFNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDE 177
MVKT FNQPARK R ARK KA +APRP RP V CPT RYNMKVR GRGFSL E
Sbjct: 20 MVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQE 79
Query: 178 LKEAGINRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXX 357
++ AG+N +AR IGI VDHRRRN+S+EG Q NV RLK Y
Sbjct: 80 VRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAK 139
Query: 358 XXXCASAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQ 492
A Q A PT +E ++ AF+A+RQ
Sbjct: 140 ADEVKKATQL-RRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
>sp|O46157|RL13_LUMRU 60S ribosomal protein L13
Length = 188
Score = 127 bits (318), Expect = 3e-29
Identities = 80/177 (45%), Positives = 95/177 (53%), Gaps = 1/177 (0%)
Frame = +1
Query: 16 FNQPARKVGRSNARKEKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRLGRGFSLDELKEAG 192
FNQPARK R AR++KA+A+APRP RP VRC T +YN ++R GRGFSLDELK AG
Sbjct: 2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAG 61
Query: 193 INRNYARQIGIYVDHRRRNLSLEGEQVNVQRLKQYXXXXXXXXXXXXXXXXXXXXXXXCA 372
IN+ AR IGI VD RRRN S+E Q+NVQRLK+Y
Sbjct: 62 INKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMK 121
Query: 373 SAVQRDTGXXXXXXXXXXXXSARVPTEAEKKFGAFYALRQARTRAKTVGKVAKpreE 543
A Q G AR T+ E+K F LRQAR + GK AK +E
Sbjct: 122 LATQL-KGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKRAKKAKE 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,920,778
Number of Sequences: 369166
Number of extensions: 1089732
Number of successful extensions: 2826
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2808
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)