Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_A09
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 169 6e-42
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 167 2e-41
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 162 7e-40
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 160 3e-39
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 160 3e-39
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 160 3e-39
sp|P41123|RL13_RAT 60S ribosomal protein L13 158 1e-38
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 153 3e-37
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 147 2e-35
sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 147 2e-35
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 169 bits (428), Expect = 6e-42
Identities = 102/202 (50%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I N H+HKDWQK V+T FNQPARKLRR AR+AKA +APRP+ RP VR
Sbjct: 1 MAPSRNGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RYN KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 61 CPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG AR+ TE EKKF AF
Sbjct: 121 RSKLILFPRKVSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
LR AR A+ G AK +E
Sbjct: 180 ANLRMARANARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 167 bits (423), Expect = 2e-41
Identities = 99/202 (49%), Positives = 116/202 (57%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I N H+HKDWQK V+T FNQPARK+RR AR+AKA +APRP+ RP VR
Sbjct: 1 MAPSRNGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG ARV +E EK F AF
Sbjct: 121 RTKLIIFPRKAAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 162 bits (410), Expect = 7e-40
Identities = 97/202 (48%), Positives = 115/202 (56%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP+ RP VR
Sbjct: 1 MAPSRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q ++G ARV +E EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 160 bits (405), Expect = 3e-39
Identities = 97/202 (48%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VR
Sbjct: 1 MAPSRNGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 160 bits (404), Expect = 3e-39
Identities = 97/202 (48%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VR
Sbjct: 1 MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 160 bits (404), Expect = 3e-39
Identities = 96/202 (47%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ + H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VR
Sbjct: 1 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG ARV TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 158 bits (400), Expect = 1e-38
Identities = 96/202 (47%), Positives = 112/202 (55%), Gaps = 1/202 (0%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVR 187
M SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VR
Sbjct: 1 MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR 60
Query: 188 CPTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
CPT RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 61 CPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEY 120
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAF 547
A Q +TG AR TE EK F AF
Sbjct: 121 RSKLILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAF 179
Query: 548 HALRQARRRAKTVGKVAKPKEE 613
+LR AR A+ G AK +E
Sbjct: 180 ASLRMARANARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 153 bits (387), Expect = 3e-37
Identities = 92/197 (46%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Frame = +2
Query: 26 HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 202
+N I N HYHK WQ+ VKT FNQPARK+RR R KA AV PRP RP VRCPT R
Sbjct: 5 NNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIR 64
Query: 203 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 382
Y+ K+R GRGF+L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 65 YHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLI 124
Query: 383 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 562
C A Q R T+ EKKF AF LR+
Sbjct: 125 LFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRK 184
Query: 563 ARRRAKTVGKVAKPKEE 613
AR A+ VG AK +E
Sbjct: 185 ARTDARLVGIRAKRAKE 201
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 147 bits (372), Expect = 2e-35
Identities = 72/119 (60%), Positives = 87/119 (73%)
Frame = +2
Query: 11 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRC 190
M + Q+ N H+HKDWQ+ VKT FNQP RKLRR AR+ KA +APRP++ RPAV+
Sbjct: 1 MAIHVKGQLPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKP 60
Query: 191 PTNRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 367
PT RYNMKVR GRGF+L+ELK AG++R A IGI VDHRRRN S E Q NV+R+K Y
Sbjct: 61 PTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
Length = 219
Score = 147 bits (372), Expect = 2e-35
Identities = 91/193 (47%), Positives = 106/193 (54%), Gaps = 1/193 (0%)
Frame = +2
Query: 26 HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 202
+N I N H+HKDWQ+ VKT FNQPAR+ RR R KA AVAPRP RP VRCPT R
Sbjct: 5 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIR 64
Query: 203 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 382
Y+ KVR GRGF+L E++ AG+N +AR IGI VD RRRN S+E QVNVQRLK+Y
Sbjct: 65 YHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLI 124
Query: 383 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 562
++ G AR TE EK F A+ LR
Sbjct: 125 LFPKGKKVLKGEANEEE--RKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRG 182
Query: 563 ARRRAKTVGKVAK 601
AR AK VG AK
Sbjct: 183 ARSIAKLVGIRAK 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,466,273
Number of Sequences: 369166
Number of extensions: 1189449
Number of successful extensions: 3429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3406
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)