Planarian EST Database


Dr_sW_016_K03

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_016_K03
         (626 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q90YV5|RL13_ICTPU  60S ribosomal protein L13                   168   9e-42
sp|Q90Z10|RL13_BRARE  60S ribosomal protein L13                   166   3e-41
sp|P41125|RL13_CHICK  60S ribosomal protein L13 (Breast basi...   161   1e-39
sp|Q9Z313|RL13_CRIGR  60S ribosomal protein L13                   159   4e-39
sp|P47963|RL13_MOUSE  60S ribosomal protein L13 (A52)             159   6e-39
sp|P26373|RL13_HUMAN  60S ribosomal protein L13 (Breast basi...   159   6e-39
sp|P41123|RL13_RAT  60S ribosomal protein L13                     157   2e-38
sp|P41126|RL13_DROME  60S ribosomal protein L13 (BBC1 protei...   153   3e-37
sp|Q962U1|RL13_SPOFR  60S ribosomal protein L13                   147   2e-35
sp|O74175|RL13_SCHPO  60S ribosomal protein L13                   147   3e-35
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
          Length = 211

 Score =  168 bits (426), Expect = 9e-42
 Identities = 101/199 (50%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I N H+HKDWQK V+T FNQPARKLRR  AR+AKA  +APRP+    RP VRCPT
Sbjct: 4   SRNGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RYN KVR GRGF+L+ELK AGIN+  AR IGI VD RRRN S E   VNVQRLK Y   
Sbjct: 64  VRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             AR+ TE EKKF AF  L
Sbjct: 124 LILFPRKVSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
          Length = 211

 Score =  166 bits (421), Expect = 3e-41
 Identities = 98/199 (49%), Positives = 115/199 (57%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I N H+HKDWQK V+T FNQPARK+RR  AR+AKA  +APRP+    RP VRCPT
Sbjct: 4   SRNGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGF+L+ELK AGIN+  AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  IRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             ARV +E EK F AF +L
Sbjct: 124 LIIFPRKAAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  161 bits (408), Expect = 1e-39
 Identities = 96/199 (48%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP+    RP VRCPT
Sbjct: 4   SRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  VRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q ++G             ARV +E EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
          Length = 211

 Score =  159 bits (403), Expect = 4e-39
 Identities = 96/199 (48%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT
Sbjct: 4   SRNGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
          Length = 211

 Score =  159 bits (402), Expect = 6e-39
 Identities = 96/199 (48%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT
Sbjct: 4   SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
          Length = 211

 Score =  159 bits (402), Expect = 6e-39
 Identities = 95/199 (47%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  +   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT
Sbjct: 4   SRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
          Length = 211

 Score =  157 bits (398), Expect = 2e-38
 Identities = 95/199 (47%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 177
           SR+  I   H+HKDWQ+ V T FNQPARK+RR  AR+AKA  +APRP     RP VRCPT
Sbjct: 4   SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63

Query: 178 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 357
            RY+ KVR GRGFSL+EL+ AGI++  AR IGI VD RRRN S E  Q NVQRLK+Y   
Sbjct: 64  VRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123

Query: 358 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 537
                                  A Q +TG             AR  TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASL 182

Query: 538 RQARRRAKTVGKVAKPKEE 594
           R AR  A+  G  AK  +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
          Length = 218

 Score =  153 bits (387), Expect = 3e-37
 Identities = 92/197 (46%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
 Frame = +1

Query: 7   HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 183
           +N I N HYHK WQ+ VKT FNQPARK+RR   R  KA AV PRP     RP VRCPT R
Sbjct: 5   NNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIR 64

Query: 184 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 363
           Y+ K+R GRGF+L+ELK AGI  N+A+ IGI VD RR+N SLE +Q N+QRLK+Y     
Sbjct: 65  YHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLI 124

Query: 364 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 543
                             C  A Q                  R  T+ EKKF AF  LR+
Sbjct: 125 LFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRK 184

Query: 544 ARRRAKTVGKVAKPKEE 594
           AR  A+ VG  AK  +E
Sbjct: 185 ARTDARLVGIRAKRAKE 201
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
          Length = 219

 Score =  147 bits (372), Expect = 2e-35
 Identities = 91/193 (47%), Positives = 106/193 (54%), Gaps = 1/193 (0%)
 Frame = +1

Query: 7   HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 183
           +N I N H+HKDWQ+ VKT FNQPAR+ RR   R  KA AVAPRP     RP VRCPT R
Sbjct: 5   NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIR 64

Query: 184 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 363
           Y+ KVR GRGF+L E++ AG+N  +AR IGI VD RRRN S+E  QVNVQRLK+Y     
Sbjct: 65  YHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLI 124

Query: 364 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 543
                                   ++ G             AR  TE EK F A+  LR 
Sbjct: 125 LFPKGKKVLKGEANEEE--RKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRG 182

Query: 544 ARRRAKTVGKVAK 582
           AR  AK VG  AK
Sbjct: 183 ARSIAKLVGIRAK 195
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
          Length = 208

 Score =  147 bits (370), Expect = 3e-35
 Identities = 71/112 (63%), Positives = 85/112 (75%)
 Frame = +1

Query: 13  QIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRCPTNRYNM 192
           Q+ N H+HKDWQ+ VKT FNQP RKLRR  AR+ KA  +APRP++  RPAV+ PT RYNM
Sbjct: 8   QLPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 193 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 348
           KVR GRGF+L+ELK AG++R  A  IGI VDHRRRN S E  Q NV+R+K Y
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,006,374
Number of Sequences: 369166
Number of extensions: 1137010
Number of successful extensions: 3324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)