Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P05
(609 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 163 3e-40
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 161 1e-39
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 157 2e-38
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 155 8e-38
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 155 8e-38
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 155 1e-37
sp|P41123|RL13_RAT 60S ribosomal protein L13 153 3e-37
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 149 4e-36
sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protei... 145 6e-35
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 144 1e-34
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 163 bits (413), Expect = 3e-40
Identities = 98/192 (51%), Positives = 110/192 (57%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 181
N H+HKDWQK V+T FNQPARKLRR AR+AKA +APRP+ RP VRCPT RYN KV
Sbjct: 11 NPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKV 70
Query: 182 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 361
R GRGF+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 71 RAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRK 130
Query: 362 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 541
A Q +TG AR+ TE EKKF AF LR AR A
Sbjct: 131 VSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANA 189
Query: 542 KTVGKVAKPKEE 577
+ G AK +E
Sbjct: 190 RLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 161 bits (408), Expect = 1e-39
Identities = 95/192 (49%), Positives = 111/192 (57%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 181
N H+HKDWQK V+T FNQPARK+RR AR+AKA +APRP+ RP VRCPT RY+ KV
Sbjct: 11 NPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKV 70
Query: 182 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 361
R GRGF+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 71 RAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRK 130
Query: 362 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 541
A Q +TG ARV +E EK F AF +LR AR A
Sbjct: 131 AAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANA 189
Query: 542 KTVGKVAKPKEE 577
+ G AK +E
Sbjct: 190 RLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 157 bits (397), Expect = 2e-38
Identities = 93/190 (48%), Positives = 110/190 (57%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP+ RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRA 72
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 547
A Q ++G ARV +E EK F AF +LR AR A+
Sbjct: 133 APKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARL 191
Query: 548 VGKVAKPKEE 577
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 155 bits (392), Expect = 8e-38
Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 547
A Q +TG ARV TE EK F AF +LR AR A+
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191
Query: 548 VGKVAKPKEE 577
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 155 bits (392), Expect = 8e-38
Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 547
A Q +TG ARV TE EK F AF +LR AR A+
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191
Query: 548 VGKVAKPKEE 577
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 155 bits (391), Expect = 1e-37
Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 547
A Q +TG ARV TE EK F AF +LR AR A+
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARL 191
Query: 548 VGKVAKPKEE 577
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 153 bits (387), Expect = 3e-37
Identities = 92/190 (48%), Positives = 107/190 (56%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT RY+ KVR
Sbjct: 13 HFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRA 72
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 73 GRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPS 132
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRAKT 547
A Q +TG AR TE EK F AF +LR AR A+
Sbjct: 133 APKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARL 191
Query: 548 VGKVAKPKEE 577
G AK +E
Sbjct: 192 FGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 149 bits (377), Expect = 4e-36
Identities = 90/192 (46%), Positives = 106/192 (55%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKV 181
N HYHK WQ+ VKT FNQPARK+RR R KA AV PRP RP VRCPT RY+ K+
Sbjct: 10 NQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKL 69
Query: 182 RLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXX 361
R GRGF+L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 70 RAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPIN 129
Query: 362 XXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQARRRA 541
C A Q R T+ EKKF AF LR+AR A
Sbjct: 130 EKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDA 189
Query: 542 KTVGKVAKPKEE 577
+ VG AK +E
Sbjct: 190 RLVGIRAKRAKE 201
>sp|Q95043|RL13_SCHMA 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 184
Score = 145 bits (367), Expect = 6e-35
Identities = 84/173 (48%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Frame = +2
Query: 11 HYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNRYNMKVRL 187
H+ K WQ MVKT FNQPARK RR ARKAKA +APRP RP V CPT RYNMKVR
Sbjct: 12 HFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRS 71
Query: 188 GRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXXXXXXXXX 367
GRGFSL E++ AG+N +AR IGI VDHRRRN+S+EG Q NV RLK Y
Sbjct: 72 GRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPA 131
Query: 368 XXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 526
A Q + A PT +E ++ AFHA+RQ
Sbjct: 132 KPQAMDAKADEVKKATQ-LRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIRQ 183
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 144 bits (364), Expect = 1e-34
Identities = 70/109 (64%), Positives = 83/109 (76%)
Frame = +2
Query: 5 NVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRCPTNRYNMKVR 184
N H+HKDWQ+ VKT FNQP RKLRR AR+ KA +APRP++ RPAV+ PT RYNMKVR
Sbjct: 11 NAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNMKVR 70
Query: 185 LGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 331
GRGF+L+ELK AG++R A IGI VDHRRRN S E Q NV+R+K Y
Sbjct: 71 AGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,156,186
Number of Sequences: 369166
Number of extensions: 1098776
Number of successful extensions: 3184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3161
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)