Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B01
(636 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 168 9e-42
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 166 4e-41
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 161 1e-39
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 159 4e-39
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 159 6e-39
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 159 6e-39
sp|P41123|RL13_RAT 60S ribosomal protein L13 157 2e-38
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 153 3e-37
sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 147 2e-35
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 147 3e-35
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 168 bits (426), Expect = 9e-42
Identities = 101/199 (50%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I N H+HKDWQK V+T FNQPARKLRR AR+AKA +APRP+ RP VRCPT
Sbjct: 4 SRNGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RYN KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E VNVQRLK Y
Sbjct: 64 VRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG AR+ TE EKKF AF L
Sbjct: 124 LILFPRKVSAPKKGDSTEEEVKMATQ-LTGPVMPIKIVHKKEKARMITEEEKKFNAFANL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 166 bits (421), Expect = 4e-41
Identities = 98/199 (49%), Positives = 115/199 (57%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I N H+HKDWQK V+T FNQPARK+RR AR+AKA +APRP+ RP VRCPT
Sbjct: 4 SRNGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGF+L+ELK AGIN+ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 IRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG ARV +E EK F AF +L
Sbjct: 124 LIIFPRKAAKPKKGDSTEEELKMATQ-LTGPVMPIKKVHKKEKARVISEDEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 161 bits (408), Expect = 1e-39
Identities = 96/199 (48%), Positives = 114/199 (57%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP+ RP VRCPT
Sbjct: 4 SRNGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGFSL+ELK AGIN+ +AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 VRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q ++G ARV +E EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSPEELKMATQ-LSGPVMPIRNVFKREKARVISEEEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 159 bits (403), Expect = 4e-39
Identities = 96/199 (48%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT
Sbjct: 4 SRNGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMRIRNVYKKEKARVITEEEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 159 bits (402), Expect = 6e-39
Identities = 96/199 (48%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT
Sbjct: 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARVITEEEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 159 bits (402), Expect = 6e-39
Identities = 95/199 (47%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ + H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT
Sbjct: 4 SRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG ARV TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPVRNVYKKEKARVITEEEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 157 bits (398), Expect = 2e-38
Identities = 95/199 (47%), Positives = 111/199 (55%), Gaps = 1/199 (0%)
Frame = +2
Query: 11 SRHNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPT 187
SR+ I H+HKDWQ+ V T FNQPARK+RR AR+AKA +APRP RP VRCPT
Sbjct: 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query: 188 NRYNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXX 367
RY+ KVR GRGFSL+EL+ AGI++ AR IGI VD RRRN S E Q NVQRLK+Y
Sbjct: 64 VRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSK 123
Query: 368 XXXXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHAL 547
A Q +TG AR TE EK F AF +L
Sbjct: 124 LILFPRKPSAPKKGDSSAEELKLATQ-LTGPVMPIRNVYKKEKARAITEEEKNFKAFASL 182
Query: 548 RQARRRAKTVGKVAKPKEE 604
R AR A+ G AK +E
Sbjct: 183 RMARANARLFGIRAKRAKE 201
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 153 bits (387), Expect = 3e-37
Identities = 92/197 (46%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Frame = +2
Query: 17 HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 193
+N I N HYHK WQ+ VKT FNQPARK+RR R KA AV PRP RP VRCPT R
Sbjct: 5 NNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIR 64
Query: 194 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 373
Y+ K+R GRGF+L+ELK AGI N+A+ IGI VD RR+N SLE +Q N+QRLK+Y
Sbjct: 65 YHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLI 124
Query: 374 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 553
C A Q R T+ EKKF AF LR+
Sbjct: 125 LFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRK 184
Query: 554 ARRRAKTVGKVAKPKEE 604
AR A+ VG AK +E
Sbjct: 185 ARTDARLVGIRAKRAKE 201
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
Length = 219
Score = 147 bits (372), Expect = 2e-35
Identities = 91/193 (47%), Positives = 106/193 (54%), Gaps = 1/193 (0%)
Frame = +2
Query: 17 HNQIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLK-KFRPAVRCPTNR 193
+N I N H+HKDWQ+ VKT FNQPAR+ RR R KA AVAPRP RP VRCPT R
Sbjct: 5 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIR 64
Query: 194 YNMKVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQYXXXXX 373
Y+ KVR GRGF+L E++ AG+N +AR IGI VD RRRN S+E QVNVQRLK+Y
Sbjct: 65 YHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLI 124
Query: 374 XXXXXXXXXXXXXXXXXXCANAVQRVTGXXXXXXXXXXXXSARVPTEAEKKFGAFHALRQ 553
++ G AR TE EK F A+ LR
Sbjct: 125 LFPKGKKVLKGEANEEE--RKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRG 182
Query: 554 ARRRAKTVGKVAK 592
AR AK VG AK
Sbjct: 183 ARSIAKLVGIRAK 195
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 147 bits (370), Expect = 3e-35
Identities = 71/112 (63%), Positives = 85/112 (75%)
Frame = +2
Query: 23 QIANVHYHKDWQKMVKTNFNQPARKLRRSNARKAKAIAVAPRPLKKFRPAVRCPTNRYNM 202
Q+ N H+HKDWQ+ VKT FNQP RKLRR AR+ KA +APRP++ RPAV+ PT RYNM
Sbjct: 8 QLPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIRPAVKPPTIRYNM 67
Query: 203 KVRLGRGFSLDELKEAGINRNYARQIGIYVDHRRRNLSLEGKQVNVQRLKQY 358
KVR GRGF+L+ELK AG++R A IGI VDHRRRN S E Q NV+R+K Y
Sbjct: 68 KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVY 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,109,855
Number of Sequences: 369166
Number of extensions: 1159056
Number of successful extensions: 3383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3360
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)