DrC_00373
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00373 (1969 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 521 e-147 sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 519 e-146 sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 519 e-146 sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 518 e-146 sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 518 e-146 sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 491 e-138 sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 473 e-133 sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 434 e-121 sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 429 e-119 sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 412 e-114
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) Length = 636 Score = 521 bits (1342), Expect = e-147 Identities = 297/629 (47%), Positives = 394/629 (62%), Gaps = 30/629 (4%) Frame = +1 Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213 P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393 + A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125 Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561 SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741 A K+FTN YIKNFG + D+ L+ELF ++G +S KVM D+ G SKGFGFVS++ HEDA Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244 Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGN 921 KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDD 303 Query: 922 DINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGK 1101 I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV K Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 1102 PLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXXXXXXXXXXXXX 1242 PLYVALAQ+KE+R AHL +Q+ QR+ +QP P Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421 Query: 1243 XXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNII 1392 ++ + S RW QNMP P + A + Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR 481 Query: 1393 VDPIISQNRNARP---ITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQM 1563 V +Q RP T + PQY A R N Q TM P Sbjct: 482 VANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVR---NPQQHLNAQPQVTMQQP--- 535 Query: 1564 KMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAEL 1743 ++ Q L T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+EL Sbjct: 536 -AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 593 Query: 1744 LYMIENENSLRMKIDEALVVLNAHKGGES 1830 L+M+E+ SLR K+DEA+ VL AH+ E+ Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) Length = 636 Score = 519 bits (1336), Expect = e-146 Identities = 295/629 (46%), Positives = 393/629 (62%), Gaps = 30/629 (4%) Frame = +1 Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213 P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393 + A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125 Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561 SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F + +R Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG 184 Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741 A K+FTN YIKNFG + D+ L+ELF ++G +S KVM D+ G SKGFGFVS++ HEDA Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244 Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGN 921 KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDD 303 Query: 922 DINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGK 1101 I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV K Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 1102 PLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXXXXXXXXXXXXX 1242 PLYVALAQ+KE+R AHL +Q+ QR+ +QP P Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421 Query: 1243 XXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNII 1392 ++ + S RW QNMP P + A + Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR 481 Query: 1393 VDPIISQNRNARPITGNVQLN---QPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQM 1563 V +Q RP + PQY A R N Q TM P Sbjct: 482 VANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVR---NPQQHLNAQPQVTMQQP--- 535 Query: 1564 KMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAEL 1743 ++ Q L T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+EL Sbjct: 536 -AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 593 Query: 1744 LYMIENENSLRMKIDEALVVLNAHKGGES 1830 L+M+E+ SLR K+DEA+ VL AH+ E+ Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) Length = 636 Score = 519 bits (1336), Expect = e-146 Identities = 295/629 (46%), Positives = 393/629 (62%), Gaps = 30/629 (4%) Frame = +1 Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213 P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393 + A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125 Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561 SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184 Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741 A K+FTN YIKNFG + D+ L++LF ++G +S KVM D+ G SKGFGFVS++ HEDA Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244 Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGN 921 KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDD 303 Query: 922 DINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGK 1101 I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV K Sbjct: 304 GIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 1102 PLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXXXXXXXXXXXXX 1242 PLYVALAQ+KE+R AHL +Q+ QR+ +QP P Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAA 421 Query: 1243 XXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNII 1392 ++ + S RW QNMP P + A + Sbjct: 422 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR 481 Query: 1393 VDPIISQNRNARPITGNVQLN---QPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQM 1563 V +Q RP + PQY A R N Q TM P Sbjct: 482 VANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVR---NPQQHLNAQPQVTMQQP--- 535 Query: 1564 KMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAEL 1743 ++ Q L T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+EL Sbjct: 536 -AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEL 593 Query: 1744 LYMIENENSLRMKIDEALVVLNAHKGGES 1830 L+M+E+ SLR K+DEA+ VL AH+ E+ Sbjct: 594 LHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) Length = 633 Score = 518 bits (1333), Expect = e-146 Identities = 299/631 (47%), Positives = 394/631 (62%), Gaps = 32/631 (5%) Frame = +1 Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213 P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393 + A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125 Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561 SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184 Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741 A K+FTN YIKNFG + D+ L+E+F +YG +S KVM D G SKGFGFVS++ HEDA Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244 Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGN 921 KAV+ + G+ + K+++VGRA KK ERQ EL+ ++E+ Q+R+ +++ GVNLY+KNL + Sbjct: 245 QKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQ-GVNLYVKNLDD 303 Query: 922 DINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGK 1101 I+DERL+ EF FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV K Sbjct: 304 GIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361 Query: 1102 PLYVALAQKKEDRVAHLRSQFQQR---VHQPQPAVXXXXXXXXXXXXXXXXXXXAR---- 1260 PLYVALAQ+KE+R AHL +Q+ QR V P P + R Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAAYY 421 Query: 1261 -PGNILQ----SRWP---------QNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNIIVD 1398 PG I Q RW QNMP P + M Q V Sbjct: 422 PPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQ--------VP 473 Query: 1399 PIISQNRNARPITGNVQLNQPRPQYNIVANG---RQAGNMMYQYPIQDNQTMMNPDQMKM 1569 ++S R A T Q PRP A R Y +++ Q + Q+ M Sbjct: 474 RVMSAQRVANTST---QTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQQHLNTQPQVAM 530 Query: 1570 PD----IESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNA 1737 ++ Q L T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ Sbjct: 531 QQPAVHVQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNS 589 Query: 1738 ELLYMIENENSLRMKIDEALVVLNAHKGGES 1830 ELL+M+E+ SLR+K+DEA+ VL AH+ E+ Sbjct: 590 ELLHMLESPESLRLKVDEAVAVLQAHQAKEA 620
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 518 bits (1333), Expect = e-146 Identities = 300/634 (47%), Positives = 399/634 (62%), Gaps = 38/634 (5%) Frame = +1 Query: 28 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASN 207 A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63 Query: 208 EAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFG 387 +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123 Query: 388 EISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAH 567 I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R A Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182 Query: 568 ----NKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHE 735 K+FTN YIKNFG + D+SL+ELF Q+G+ +S KVM D G SKGFGFVSY++HE Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242 Query: 736 DAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNL 915 DA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ-GVNLYIKNL 301 Query: 916 GNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVE 1095 + I+DE+L+ EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359 Query: 1096 GKPLYVALAQKKEDRVAHLRSQFQQRV------------HQPQPAVXXXXXXXXXXXXXX 1239 KPLYVALAQ+KE+R AHL +Q+ QRV +Q QPA Sbjct: 360 SKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA-------GGYFVPA 412 Query: 1240 XXXXXARPGNILQSRWPQNMPYIQPRNIGMPANQNIMMAGMPQNQQR---RNIIVDPIIS 1410 RP ++ Q P + + G P M + + Q+ R R++ Sbjct: 413 VPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSEC 472 Query: 1411 QNRNARPITGNVQLNQ-----------PRPQYNI-------VANGRQAGNMMYQYPIQDN 1536 +R A G Q P N+ A R Y ++ Sbjct: 473 PDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP 532 Query: 1537 QTMMNPDQMKMPDIESQ-IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITG 1713 + P Q P + Q + T S +A A E KQ+LGE+++PL+ ++AGKITG Sbjct: 533 HPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 592 Query: 1714 MFLELDNAELLYMIENENSLRMKIDEALVVLNAH 1815 M LE+DN+ELL+M+E+ SLR K+DEA+ VL AH Sbjct: 593 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 491 bits (1265), Expect = e-138 Identities = 283/628 (45%), Positives = 388/628 (61%), Gaps = 27/628 (4%) Frame = +1 Query: 28 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASN 207 + P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIR+CRDL+T S YAYVN+Q + Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTK 63 Query: 208 EAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFG 387 +A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIF+KNLD SI K + DT + FG Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123 Query: 388 EISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR--- 558 I SC V DENG SKG+ FV+F AE+AI+ +NG ++ + V+V +F R +R Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182 Query: 559 -NAHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHE 735 A K+F N YIKNFG + D+ L++LF ++G +S KVM D+ G SKGFGFVS++ HE Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Query: 736 DAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNL 915 DA KAV+ +NG+ + K IYVGRA KK ERQ EL+ +E+ +Q+R+ +++ VNLY+KNL Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQV-VNLYVKNL 301 Query: 916 GNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVE 1095 + I+DERL+ F+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359 Query: 1096 GKPLYVALAQKKEDRVAHLRSQFQQRVHQ----PQPAVXXXXXXXXXXXXXXXXXXXARP 1263 KPLYVALAQ+KE+R A+L +++ QR+ P P Sbjct: 360 TKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPP 419 Query: 1264 GNILQ----SRW----PQNMPYIQPRNIGMPANQNIMMAGM-PQNQQRRNIIVDPIISQN 1416 I + RW + P+ + P + + M P + Q V ++S Sbjct: 420 SQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQ-----VPRVMSTQ 474 Query: 1417 RNARPITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMK--MPDIESQ- 1587 R A T V PRP A A + +Y + NP Q + P + Q Sbjct: 475 RVANTSTQTV---GPRPAAAAAAAATPAVRTVPRYKYAAG--VRNPQQHRNAQPQVTMQQ 529 Query: 1588 -------IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELL 1746 + T S++A+A + KQ+LGE+++PL+ +AGKITGM LE+DN+ELL Sbjct: 530 LAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 589 Query: 1747 YMIENENSLRMKIDEALVVLNAHKGGES 1830 YM+E+ SLR K+DEA+ VL AH+ E+ Sbjct: 590 YMLESPESLRSKVDEAVAVLQAHQAKEA 617
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP) Length = 634 Score = 473 bits (1218), Expect = e-133 Identities = 286/638 (44%), Positives = 386/638 (60%), Gaps = 48/638 (7%) Frame = +1 Query: 49 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMD 228 ASLYVGDL DV E+ L++KF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61 Query: 229 NLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKV 408 +NF+ + +P RIMWSQRDP+ RRSGVGN+FIKNLD +I K I DTF+ FG I SCKV Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121 Query: 409 QTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAH----NKD 576 TDE G SKG+ FV+F E A +I +NG ++ K VYV KFIPR +R K Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181 Query: 577 FTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVN 756 FTN Y+KNF D+ L+E FE YG+I S KVM ++G SKGFGFV+++ E A AV Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241 Query: 757 TLNGRVI-EDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKS--GVNLYIKNLGNDI 927 LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R H+S GVNLY+KNL + I Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR---HESVFGVNLYVKNLDDTI 298 Query: 928 NDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPL 1107 +D+RL+ F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV+E+NG++V KPL Sbjct: 299 DDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357 Query: 1108 YVALAQKKEDRVAHLRSQFQQ-----------RVHQPQPAVXXXXXXXXXXXXXXXXXXX 1254 YVALAQ+KE+R AHL SQ+ + +++QP A Sbjct: 358 YVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVA 417 Query: 1255 ARPGNILQSRW-PQNMPYIQPRNI---------------GMPANQNIMMAG----MPQNQ 1374 + N RW PQ P + + +P AG PQ Q Sbjct: 418 TQMRN--TPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQ 475 Query: 1375 QRRNIIVDPIISQNRNARPITGNVQLNQPRPQY--NIVANGRQAGNMMYQY-------PI 1527 +N AR ITG Q P Q +A G Q Y+Y P+ Sbjct: 476 GTHAAAAAANNMRNTGARAITGQ-QTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPV 534 Query: 1528 -QDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGK 1704 Q +QT P Q++ + E I S +ANA E KQ+LGE++YP++ ++AGK Sbjct: 535 PQLHQTQPIPQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGK 590 Query: 1705 ITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHK 1818 ITGM LE++N+ELL+MIE++ +L+ K++EA+ VL H+ Sbjct: 591 ITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP) Length = 653 Score = 434 bits (1116), Expect = e-121 Identities = 258/616 (41%), Positives = 363/616 (58%), Gaps = 14/616 (2%) Frame = +1 Query: 1 STTLKKKAMANP--TIPC-ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKS 171 ST ++A P T P ASLYVG+L P VTEA+L+E F + G V SIRVCRD VTR+S Sbjct: 61 STPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRS 120 Query: 172 LGYAYVNYQASNEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSIT 351 LGYAYVN+ + + A+D LN+ I GRPCRIMWSQRDP+ R+ G GN+FIKNLDP+I Sbjct: 121 LGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAID 180 Query: 352 VKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYV 531 K ++DTF+ FG+I SCKV DE G +KG+ FV+F+ A AI+ +NG ++ +K VYV Sbjct: 181 NKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240 Query: 532 AKFIPRTQR----NAHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNS 699 + R +R A +FTN YIKN T + ++ +LF Q+GEI S ++ D+ Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300 Query: 700 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 879 +GFGFV+Y HE A KAV+ LN + + K +YVGRA KK ER+ ELR RYE+ + E++ + Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360 Query: 880 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 1059 ++ GVNL+IKNL ++++DERLK+EF+ FG ITSAK+M + E SKGFGFVC++ P+EA Sbjct: 361 YQ-GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEAN 418 Query: 1060 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ----RVHQPQPAVXXXXXXXXXX 1227 +AV+EMN +++ GKPLYVALAQ+KE R + L +Q Q R+ Q A Sbjct: 419 KAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGA 478 Query: 1228 XXXXXXXXXARPGNILQSRWPQNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNIIVDPII 1407 P I + + MP + N MP M GMP Sbjct: 479 TGPLIYGPGGYP--IPAAVNGRGMPMVPGHNGPMP-----MYPGMP-------------- 517 Query: 1408 SQNRNARPITGNVQLNQPRPQYNIVANGR---QAGNMMYQYPIQDNQTMMNPDQMKMPDI 1578 +Q P G +N P + A GR G++ P + +P + Sbjct: 518 TQFPAGGPAPGYPGMNARGP---VPAQGRPMMMPGSVPSAGPAEAE---------AVPAV 565 Query: 1579 ESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIE 1758 + T + +A KQ+LGE +YP V ++GKITGM LE+ N+ELL ++E Sbjct: 566 PGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLE 625 Query: 1759 NENSLRMKIDEALVVL 1806 ++++L +++EA+ VL Sbjct: 626 DDSALNERVNEAIGVL 641
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2) Length = 629 Score = 429 bits (1104), Expect = e-119 Identities = 251/604 (41%), Positives = 361/604 (59%), Gaps = 13/604 (2%) Frame = +1 Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231 SLYVGDL +VT++ L++ F G V+++RVCRDLVTR+SLGY YVN+ +A A+ Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 232 LNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQ 411 LN+ ++G+P R+M+S RDP+ RRSG GNIFIKNLD SI K ++DTF++FG I SCKV Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156 Query: 412 TDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRN--AHNKDFTN 585 D +G SKG+ FV + E A+KAI+ +NG ++ +K VYV F+ R +R+ A+ FTN Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216 Query: 586 CYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLN 765 Y+KN D L+ F +YG+I SA VM D EG SKGFGFV+++ +DA +AV +LN Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276 Query: 766 GRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLK 945 G +DK YVGRA KK+ER+ ELR RYE+ +E + +S NLY+KNL I+DE+LK Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS-NLYVKNLDPSISDEKLK 335 Query: 946 SEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQ 1125 F+ FG +TS+KVM N TSKG GFV F+ P+EAT A+S+++GK++E KPLYVA+AQ Sbjct: 336 EIFSPFGTVTSSKVM-RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394 Query: 1126 KKEDRVAHLRSQFQQ-RVHQPQPAVXXXXXXXXXXXXXXXXXXXARPGNILQSRWPQNMP 1302 +KEDR L++QF Q R QP+V PG Q + Q P Sbjct: 395 RKEDRRVRLQAQFSQVRPVAMQPSV----------GPRMPVYPPGGPGIGQQMFYGQAPP 444 Query: 1303 YIQPRNIGMPANQNIMMAGMPQNQQRRNIIVDPIISQNR----NARPITGNVQLNQ---P 1461 + P G Q ++ P + + + Q + RP G +Q +Q P Sbjct: 445 AMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRP--GGIQHSQQQNP 502 Query: 1462 RPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDL---STTSKIANADSM 1632 Q + GR M++YP Q + D+ + + L + S ++NA Sbjct: 503 MMQQQMHPRGR-----MFRYP----QGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPE 553 Query: 1633 EAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNA 1812 + + +LGE +YPLV + + A K+TGM LE+D E+L+++E+ +L+ K+ EA+ VL + Sbjct: 554 QQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRS 613 Query: 1813 HKGG 1824 G Sbjct: 614 VAAG 617
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) Length = 660 Score = 412 bits (1058), Expect = e-114 Identities = 256/628 (40%), Positives = 360/628 (57%), Gaps = 34/628 (5%) Frame = +1 Query: 25 MANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQAS 204 +A+ T P +SLY GDL P VTEA L++ F+ NV+S+RVCRD R+SLGYAY+N+ Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNP 99 Query: 205 NEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANF 384 N+A AM+ LN+ + RP RIM S RDP+ R SG GNIFIKNLD SI K + +TF++F Sbjct: 100 NDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSF 159 Query: 385 GEISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR-- 558 G I SCKV D G SKG+ FV F E A+ AI +NG ++ +K V+V FI R +R Sbjct: 160 GTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERAR 219 Query: 559 --NAHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEH 732 N FTN Y+KN + + LR+ F ++G I SA VM D+ GNS+ FGFV+++ Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279 Query: 733 EDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVNLYIKN 912 E A AV +NG + D +YVGRA KK+ER+ ELR ++E+ R R ++ G NLY+KN Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEK-SQGANLYLKN 338 Query: 913 LGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIV 1092 L + ++DE+LK F+ +GN+TS+KVMLN + S+GFGFV +S P+EA RA+SEMNGK++ Sbjct: 339 LDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMI 397 Query: 1093 EGKPLYVALAQKKEDRVAHLRSQFQQRVHQPQPAVXXXXXXXXXXXXXXXXXXXARPGNI 1272 KPLY+ALAQ+KEDR AHL++ F Q + P P PG Sbjct: 398 GRKPLYIALAQRKEDRRAHLQALFSQ-IRAPGPMSGFHHP----------------PGGP 440 Query: 1273 LQSRWPQNMPYIQPRNIGMPANQNI-------MMAGMPQNQQRRNIIVDPIISQNRNARP 1431 + PQ+M Y+ M +Q I M GM N IV + + P Sbjct: 441 MPGP-PQHM-YVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGP 498 Query: 1432 ITG------NVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMN---PDQMKMPDIES 1584 G NVQ + + Q + + + M Y + + M+ P + P I Sbjct: 499 RMGFRRGATNVQQHIQQQQ---LMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPL 555 Query: 1585 QIDLST--------------TSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFL 1722 ID S+ TS +A+A + ++LGE++YPLV +H K+TGM L Sbjct: 556 PIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLL 615 Query: 1723 ELDNAELLYMIENENSLRMKIDEALVVL 1806 E+D AE+L+++E+ +L+ K+ EAL VL Sbjct: 616 EMDQAEILHLMESPEALKSKVSEALDVL 643
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,853,370
Number of Sequences: 369166
Number of extensions: 4518802
Number of successful extensions: 15397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14615
length of database: 68,354,980
effective HSP length: 117
effective length of database: 46,740,985
effective search space used: 25146649930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
