Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C08
(666 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 91 4e-18
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 89 1e-17
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 89 1e-17
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 88 2e-17
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 87 4e-17
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 87 4e-17
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 85 1e-16
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 66 7e-11
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 62 1e-09
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 59 9e-09
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 90.5 bits (223), Expect = 4e-18
Identities = 57/146 (39%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Frame = +3
Query: 150 QNRNARPITGNVQLNQPRPQYN--IVANGRQAGNMMYQY-------PI-QDNQTMMNPDQ 299
+N AR ITG Q P Q +A G Q Y+Y P+ Q +QT P Q
Sbjct: 488 RNTGARAITGQ-QTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQ 546
Query: 300 MKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAE 479
++ + E I S +ANA E KQ+LGE++YP++ ++AGKITGM LE++N+E
Sbjct: 547 LQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSE 602
Query: 480 LLYMIENENSLRMKIDEALVVLNAHK 557
LL+MIE++ +L+ K++EA+ VL H+
Sbjct: 603 LLHMIEDQEALKAKVEEAVAVLQVHR 628
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 88.6 bits (218), Expect = 1e-17
Identities = 52/122 (42%), Positives = 71/122 (58%)
Frame = +3
Query: 204 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 383
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 384 LLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGG 563
+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+
Sbjct: 561 MLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
Query: 564 ES 569
E+
Sbjct: 621 EA 622
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 88.6 bits (218), Expect = 1e-17
Identities = 52/122 (42%), Positives = 71/122 (58%)
Frame = +3
Query: 204 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 383
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 384 LLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGG 563
+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+
Sbjct: 561 MLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
Query: 564 ES 569
E+
Sbjct: 621 EA 622
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 88.2 bits (217), Expect = 2e-17
Identities = 52/122 (42%), Positives = 71/122 (58%)
Frame = +3
Query: 204 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 383
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 384 LLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGG 563
+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+
Sbjct: 561 MLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
Query: 564 ES 569
E+
Sbjct: 621 EA 622
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 87.0 bits (214), Expect = 4e-17
Identities = 40/77 (51%), Positives = 58/77 (75%)
Frame = +3
Query: 339 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 518
T S++A+A + KQ+LGE+++PL+ +AGKITGM LE+DN+ELLYM+E+ SLR
Sbjct: 541 TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRS 600
Query: 519 KIDEALVVLNAHKGGES 569
K+DEA+ VL AH+ E+
Sbjct: 601 KVDEAVAVLQAHQAKEA 617
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 87.0 bits (214), Expect = 4e-17
Identities = 49/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 204 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 383
PQY A R ++ Q + Q ++ ++ Q L T S +A A E KQ
Sbjct: 508 PQYKYAAGVRNQQHLNTQPQVAMQQPAVH--------VQGQEPL-TASMLAAAPPQEQKQ 558
Query: 384 LLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGG 563
+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR+K+DEA+ VL AH+
Sbjct: 559 MLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRLKVDEAVAVLQAHQAK 618
Query: 564 ES 569
E+
Sbjct: 619 EA 620
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 85.1 bits (209), Expect = 1e-16
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +3
Query: 252 YQYPIQDNQTMMNPDQMKMPDIESQ-IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAG 428
Y ++ + P Q P + Q + T S +A A E KQ+LGE+++PL+
Sbjct: 525 YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS 584
Query: 429 DMAGKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAH 554
++AGKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH
Sbjct: 585 NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 66.2 bits (160), Expect = 7e-11
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +3
Query: 342 TSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMK 521
TS +A+A + ++LGE++YPLV +H K+TGM LE+D AE+L+++E+ +L+ K
Sbjct: 576 TSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSK 635
Query: 522 IDEALVVL 545
+ EAL VL
Sbjct: 636 VSEALDVL 643
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 62.4 bits (150), Expect = 1e-09
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Frame = +3
Query: 201 RPQYNIVANGRQAGNMMY---QYPIQDNQTMMNPDQMKMP------------DIESQIDL 335
+PQ GR+ G + + Q P+ Q + P D+ + + L
Sbjct: 479 QPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDMGNNMPL 538
Query: 336 ST---TSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENEN 506
+ S ++NA + + +LGE +YPLV + + A K+TGM LE+D E+L+++E+
Sbjct: 539 TIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPE 598
Query: 507 SLRMKIDEALVVLNAHKGG 563
+L+ K+ EA+ VL + G
Sbjct: 599 ALKAKVAEAMDVLRSVAAG 617
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 59.3 bits (142), Expect = 9e-09
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +3
Query: 306 MPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELL 485
+P + + T + +A KQ+LGE +YP V ++GKITGM LE+ N+ELL
Sbjct: 562 VPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELL 621
Query: 486 YMIENENSLRMKIDEALVVL 545
++E++++L +++EA+ VL
Sbjct: 622 ELLEDDSALNERVNEAIGVL 641
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,599,134
Number of Sequences: 369166
Number of extensions: 1394861
Number of successful extensions: 3776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3774
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)