Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_P04
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 335 1e-91
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 334 2e-91
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 333 5e-91
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 332 6e-91
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 325 1e-88
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 315 1e-85
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 297 2e-80
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 292 1e-78
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 284 2e-76
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 281 2e-75
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 335 bits (858), Expect = 1e-91
Identities = 167/290 (57%), Positives = 218/290 (75%), Gaps = 4/290 (1%)
Frame = +1
Query: 28 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASN 207
A + P ASLYVGDLH DVTEA+LYEKF G VLSIRVCRD++TR+SLGYAYVN+Q
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 208 EAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFG 387
+A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGN+FIKNLD SI K + DTF+ FG
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123
Query: 388 EISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAH 567
I SCKV DENG SKG+AFV+F + A+KAI+ +NG ++ ++ V+V +F R +R A
Sbjct: 124 NILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 568 ----NKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHE 735
K+FTN YIKNFG + D+SL+ELF Q+G+ +S KVM D G SKGFGFVSY++HE
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 736 DAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
DA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +++
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Score = 162 bits (409), Expect = 2e-39
Identities = 94/286 (32%), Positives = 150/286 (52%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + LY+ F GN+LS +V D S GYA+V+++ A A++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 157
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ R + + + A+ N++IKN + + + + F+ FG+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV D NG SKGF FV++ DA KA++ +NGK I KI++V + + +R A K
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N YIKN + D+ LR+ F +G I SAKVM++ +G SKGFG
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ER+ L +Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 334 bits (856), Expect = 2e-91
Identities = 163/288 (56%), Positives = 217/288 (75%), Gaps = 4/288 (1%)
Frame = +1
Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561
SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R
Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741
A K+FTN YIKNFG + D+ L+ELF ++G +S KVM D+ G SKGFGFVS++ HEDA
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Score = 160 bits (404), Expect = 6e-39
Identities = 94/286 (32%), Positives = 147/286 (51%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + LY+ F GN+LS +V D S GY +V+++ A+ A++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEK 157
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ R + + + AR N++IKN + + + + F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV TDE+G SKGF FV+F DA+KA+ +NGK + K +YV + + +R K
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N Y+KN + D+ LR+ F +G I SAKVM++ G SKGFG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ERQ L +Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 333 bits (853), Expect = 5e-91
Identities = 162/288 (56%), Positives = 217/288 (75%), Gaps = 4/288 (1%)
Frame = +1
Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561
SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F R +R
Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741
A K+FTN YIKNFG + D+ L++LF ++G +S KVM D+ G SKGFGFVS++ HEDA
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Score = 161 bits (408), Expect = 2e-39
Identities = 95/286 (33%), Positives = 147/286 (51%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + LY+ F GN+LS +V D S GY +V+++ A+ A++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEK 157
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ R + + + AR N++IKN + + + D F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV TDE+G SKGF FV+F DA+KA+ +NGK + K +YV + + +R K
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N Y+KN + D+ LR+ F +G I SAKVM++ G SKGFG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ERQ L +Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 332 bits (852), Expect = 6e-91
Identities = 162/288 (56%), Positives = 217/288 (75%), Gaps = 4/288 (1%)
Frame = +1
Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213
P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561
SCKV DENG SKG+ FV+F + AE+AI+ +NG ++ ++ V+V +F + +R
Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELG 184
Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741
A K+FTN YIKNFG + D+ L+ELF ++G +S KVM D+ G SKGFGFVS++ HEDA
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +++
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Score = 160 bits (406), Expect = 3e-39
Identities = 96/286 (33%), Positives = 149/286 (52%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + LY+ F GN+LS +V D S GY +V+++ A+ A++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEK 157
Query: 232 LNFEDIHGRPCRI--MWSQRDP----AARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ R + SQ++ AR N++IKN + + + + F FG
Sbjct: 158 MNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV TDE+G SKGF FV+F DA+KA+ +NGK + K +YV + + +R K
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N Y+KN + D+ LR+ F +G I SAKVM++ G SKGFG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ERQ L +Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 325 bits (833), Expect = 1e-88
Identities = 160/288 (55%), Positives = 213/288 (73%), Gaps = 4/288 (1%)
Frame = +1
Query: 34 PTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEA 213
P+ P ASLYVGDLH DVTEA+LYEKF G +LSIRVCRD++TR+SLGYAYVN+Q +A
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 214 KSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+ A+D +NF+ I GRP RIMWSQRDP+ R+SGVGNIFIKNLD SI K + DTF+ FG I
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 125
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR----N 561
SCKV DENG SKG+ FV+F + AE+AI +NG ++ ++ V+V +F R +R
Sbjct: 126 LSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELG 184
Query: 562 AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDA 741
A K+FTN YIKNFG + D+ L+E+F +YG +S KVM D G SKGFGFVS++ HEDA
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDA 244
Query: 742 MKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
KAV+ + G+ + K+++VGRA KK ERQ EL+ ++E+ Q+R+ +++
Sbjct: 245 QKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQ 292
Score = 154 bits (390), Expect = 2e-37
Identities = 92/286 (32%), Positives = 146/286 (51%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + LY+ F GN+LS +V D S GY +V+++ A+ A+D
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDK 157
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ R + + + AR N++IKN + + + + F +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV TD+NG SKGF FV+F DA+KA+ + GK + K ++V + + +R K
Sbjct: 218 LSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N Y+KN + D+ LR+ F +G I SAKVM++ G SKGFG
Sbjct: 278 RKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ERQ L +Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 315 bits (807), Expect = 1e-85
Identities = 155/290 (53%), Positives = 209/290 (72%), Gaps = 4/290 (1%)
Frame = +1
Query: 28 ANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASN 207
+ P+ P ASLYVGDLHPDVTEA+LYEKF G +LSIR+CRDL+T S YAYVN+Q +
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTK 63
Query: 208 EAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFG 387
+A+ A+D +NF+ I G+P RIMWSQRDP+ R+SGVGNIF+KNLD SI K + DT + FG
Sbjct: 64 DAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 388 EISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQR--- 558
I SC V DENG SKG+ FV+F AE+AI+ +NG ++ + V+V +F R +R
Sbjct: 124 NILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Query: 559 -NAHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHE 735
A K+F N YIKNFG + D+ L++LF ++G +S KVM D+ G SKGFGFVS++ HE
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 736 DAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
DA KAV+ +NG+ + K IYVGRA KK ERQ EL+ +E+ +Q+R+ +++
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQ 292
Score = 160 bits (405), Expect = 4e-39
Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 20/286 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
+++V +L + LY+ GN+LS V D S GY +V+++ A+ A+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKK 157
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++GR + + + AR N++IKN + + + D F FG
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNK 573
S KV TDE+G SKGF FV+F DA+KA+ +NGK + K +YV + + +R K
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 574 --------------DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
N Y+KN + D+ LR+ F +G I SAKVM++ G SKGFG
Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
FV + E+A KAV +NGR++ K +YV A +K ERQ L Y
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEY 382
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 297 bits (761), Expect = 2e-80
Identities = 153/279 (54%), Positives = 199/279 (71%), Gaps = 5/279 (1%)
Frame = +1
Query: 49 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMD 228
ASLYVGDL DV E+ L++KF + G VLSIRVCRD++TR+SLGYAYVN+Q +A+ A+D
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 229 NLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKV 408
+NF+ + +P RIMWSQRDP+ RRSGVGN+FIKNLD +I K I DTF+ FG I SCKV
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 409 QTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAH----NKD 576
TDE G SKG+ FV+F E A +I +NG ++ K VYV KFIPR +R K
Sbjct: 122 ATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKL 181
Query: 577 FTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVN 756
FTN Y+KNF D+ L+E FE YG+I S KVM ++G SKGFGFV+++ E A AV
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 757 TLNGRVI-EDKTIYVGRAMKKAERQRELRARYEKTRQER 870
LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR 280
Score = 155 bits (391), Expect = 2e-37
Identities = 94/287 (32%), Positives = 150/287 (52%), Gaps = 21/287 (7%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + +Y+ F GN+LS +V D S GY +V+++ A +++D
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDK 149
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++G+ + +++ + N+++KN +++ + F +G+I
Sbjct: 150 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIRE-KIVYVAKFIPRTQRNA-- 564
+S KV + E+G SKGF FV F AE A+QA+NGK + E K +YVA+ + +R
Sbjct: 210 TSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQEL 269
Query: 565 -----------HNKDF-TNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGF 708
H F N Y+KN + D LR F YG I SAKVM D+EG SKGF
Sbjct: 270 KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGF 329
Query: 709 GFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARY 849
GFV + +A AV LNGRV+ K +YV A +K ER+ L ++Y
Sbjct: 330 GFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQY 376
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 292 bits (747), Expect = 1e-78
Identities = 149/302 (49%), Positives = 203/302 (67%), Gaps = 7/302 (2%)
Frame = +1
Query: 1 STTLKKKAMANP--TIPC-ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKS 171
ST ++A P T P ASLYVG+L P VTEA+L+E F + G V SIRVCRD VTR+S
Sbjct: 61 STPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRS 120
Query: 172 LGYAYVNYQASNEAKSAMDNLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSIT 351
LGYAYVN+ + + A+D LN+ I GRPCRIMWSQRDP+ R+ G GN+FIKNLDP+I
Sbjct: 121 LGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAID 180
Query: 352 VKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYV 531
K ++DTF+ FG+I SCKV DE G +KG+ FV+F+ A AI+ +NG ++ +K VYV
Sbjct: 181 NKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Query: 532 AKFIPRTQR----NAHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNS 699
+ R +R A +FTN YIKN T + ++ +LF Q+GEI S ++ D+
Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP 300
Query: 700 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 879
+GFGFV+Y HE A KAV+ LN + + K +YVGRA KK ER+ ELR RYE+ + E++ +
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
Query: 880 HK 885
++
Sbjct: 361 YQ 362
Score = 156 bits (394), Expect = 8e-38
Identities = 94/296 (31%), Positives = 155/296 (52%), Gaps = 20/296 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L P + L++ F G +LS +V D + GY +V++ + A +A+++
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAK-GYGFVHFDSVESANAAIEH 227
Query: 232 LNFEDIHGRPCRI------MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEI 393
+N ++ + + Q A ++ N++IKNLD IT +E +D F FGEI
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 394 SSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAH-- 567
+S + D+N +GF FVN+ A+KA+ +N K + K +YV + + +R
Sbjct: 288 TSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR 347
Query: 568 -----------NK-DFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFG 711
NK N +IKN + D+ L+ F +G I SAK+M D++G SKGFG
Sbjct: 348 KRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFG 407
Query: 712 FVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 879
FV Y E+A KAV +N R++ K +YV A +K R+ +L A+ + Q RLQQ
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 284 bits (727), Expect = 2e-76
Identities = 141/281 (50%), Positives = 194/281 (69%), Gaps = 2/281 (0%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
SLYVGDL +VT++ L++ F G V+++RVCRDLVTR+SLGY YVN+ +A A+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 232 LNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKVQ 411
LN+ ++G+P R+M+S RDP+ RRSG GNIFIKNLD SI K ++DTF++FG I SCKV
Sbjct: 97 LNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVA 156
Query: 412 TDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRN--AHNKDFTN 585
D +G SKG+ FV + E A+KAI+ +NG ++ +K VYV F+ R +R+ A+ FTN
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 586 CYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLN 765
Y+KN D L+ F +YG+I SA VM D EG SKGFGFV+++ +DA +AV +LN
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 766 GRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKS 888
G +DK YVGRA KK+ER+ ELR RYE+ +E + +S
Sbjct: 277 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQS 317
Score = 162 bits (410), Expect = 1e-39
Identities = 89/293 (30%), Positives = 160/293 (54%), Gaps = 18/293 (6%)
Frame = +1
Query: 52 SLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMDN 231
++++ +L + L++ F + GN++S +V D + +S GY +V Y A+ A++
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEK 183
Query: 232 LNFEDIHGRPCRI----MWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISS 399
LN ++ + + +RD A ++ N+++KNL S T ++ + F +G+I+S
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 400 CKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRN------ 561
V D G SKGF FVNF DA +A++++NG +K YV + +++R
Sbjct: 244 AVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVR 303
Query: 562 --------AHNKDFTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFV 717
A +N Y+KN + D+ L+E+F +G + S+KVM D G SKG GFV
Sbjct: 304 YEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFV 363
Query: 718 SYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQ 876
++ E+A +A++ L+G++IE K +YV A +K +R+ L+A++ + R +Q
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQ 416
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 281 bits (719), Expect = 2e-75
Identities = 140/283 (49%), Positives = 193/283 (68%), Gaps = 4/283 (1%)
Frame = +1
Query: 49 ASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAYVNYQASNEAKSAMD 228
ASLYVGDL P V+EA LY+ F G+V SIRVCRD +T+ SLGYAYVN+ + A++
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 229 NLNFEDIHGRPCRIMWSQRDPAARRSGVGNIFIKNLDPSITVKEINDTFANFGEISSCKV 408
LN+ I GR CRIMWSQRDP+ R+ G GNIFIKNL P I K + DTF+ FG+I S K+
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 409 QTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVYVAKFIPRTQRNAHNKD---- 576
TDENG SKGF FV+F E A++AI A+NG ++ + +YVA + R +R++ ++
Sbjct: 158 ATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAH 217
Query: 577 FTNCYIKNFGTHLLDKSLRELFEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVN 756
+TN Y+KN + D+ +ELF ++G IVSA + D +G KGFGFV+Y++HEDA+KAV
Sbjct: 218 YTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVE 277
Query: 757 TLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 885
LN + + +YVGRA KK ER L+ +YE R E++ +++
Sbjct: 278 ALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Score = 158 bits (399), Expect = 2e-38
Identities = 95/311 (30%), Positives = 160/311 (51%), Gaps = 20/311 (6%)
Frame = +1
Query: 7 TLKKKAMANPTIPCASLYVGDLHPDVTEAILYEKFQTHGNVLSIRVCRDLVTRKSLGYAY 186
+L+KK N +++ +LHPD+ LY+ F G++LS ++ D KS G+ +
Sbjct: 119 SLRKKGSGN-------IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGF 170
Query: 187 VNYQASNEAKSAMDNLNFEDIHGRPC----RIMWSQRDPAAR--RSGVGNIFIKNLDPSI 348
V+++ AK A+D LN ++G+ + +RD ++ N+++KN++
Sbjct: 171 VHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSET 230
Query: 349 TVKEINDTFANFGEISSCKVQTDENGVSKGFAFVNFNMEADAEKAIQAINGKMIREKIVY 528
T ++ + FA FG I S ++ D +G KGF FVN+ DA KA++A+N + + +Y
Sbjct: 231 TDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 290
Query: 529 VAKFIPRTQR-NAHNKDF-------------TNCYIKNFGTHLLDKSLRELFEQYGEIVS 666
V + + +R + K + N ++KN + D+ L E F YG I S
Sbjct: 291 VGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITS 350
Query: 667 AKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRAR 846
AKVM + G SKGFGFV + E+A KA+ N +++ K +YV A +K R+ +L +
Sbjct: 351 AKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQ 410
Query: 847 YEKTRQERLQQ 879
+ Q R QQ
Sbjct: 411 IQARNQMRYQQ 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,428,971
Number of Sequences: 369166
Number of extensions: 1893315
Number of successful extensions: 7324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6783
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)