Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K14
(652 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 101 1e-21
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 100 4e-21
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 99 1e-20
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 99 1e-20
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 99 1e-20
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 95 1e-19
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 91 3e-18
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 90 6e-18
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 85 2e-16
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 84 2e-16
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 101 bits (252), Expect = 1e-21
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F +ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQRV 218
AHL +Q+ QRV
Sbjct: 375 KAHLTNQYMQRV 386
Score = 63.2 bits (152), Expect = 6e-10
Identities = 33/70 (47%), Positives = 45/70 (64%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F S KVM + N SKGFGFV + ++A +AV EMNGK + GK ++V AQKK +R
Sbjct: 214 FGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
Query: 183 VAHLRSQFQQ 212
A L+ +F+Q
Sbjct: 273 QAELKRKFEQ 282
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/70 (31%), Positives = 43/70 (61%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV+ ++ N SKG+ FV F + A +A+ +MNG ++ + ++V + +++R
Sbjct: 122 FGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGAKAKE 189
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 100 bits (248), Expect = 4e-21
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQR---VHQPQPAV 239
AHL +Q+ QR V P P +
Sbjct: 375 QAHLTNQYMQRMASVRVPNPVI 396
Score = 60.1 bits (144), Expect = 5e-09
Identities = 31/65 (47%), Positives = 43/65 (66%)
Frame = +3
Query: 18 SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR 197
S KVM + +N SKGFGFV F ++A +AV EM GK + GK ++V AQKK +R L+
Sbjct: 219 SVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELK 277
Query: 198 SQFQQ 212
+F+Q
Sbjct: 278 RKFEQ 282
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV+ ++ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGARAKE 189
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 98.6 bits (244), Expect = 1e-20
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQRV 218
AHL +Q+ QR+
Sbjct: 375 QAHLTNQYMQRM 386
Score = 63.9 bits (154), Expect = 3e-10
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +3
Query: 18 SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR 197
S KVM + E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 198 SQFQQ 212
+F+Q
Sbjct: 278 RKFEQ 282
Score = 47.8 bits (112), Expect = 3e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV+ ++ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGARAKE 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 98.6 bits (244), Expect = 1e-20
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQRV 218
AHL +Q+ QR+
Sbjct: 375 QAHLTNQYMQRM 386
Score = 63.9 bits (154), Expect = 3e-10
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +3
Query: 18 SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR 197
S KVM + E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 198 SQFQQ 212
+F+Q
Sbjct: 278 RKFEQ 282
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV+ ++ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 98.6 bits (244), Expect = 1e-20
Identities = 49/72 (68%), Positives = 60/72 (83%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQRV 218
AHL +Q+ QR+
Sbjct: 375 QAHLTNQYMQRM 386
Score = 63.9 bits (154), Expect = 3e-10
Identities = 33/65 (50%), Positives = 44/65 (67%)
Frame = +3
Query: 18 SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR 197
S KVM + E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 198 SQFQQ 212
+F+Q
Sbjct: 278 RKFEQ 282
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV+ ++ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R
Sbjct: 122 FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGARAKE 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 95.1 bits (235), Expect = 1e-19
Identities = 47/72 (65%), Positives = 60/72 (83%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R
Sbjct: 317 FGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 183 VAHLRSQFQQRV 218
A+L +++ QR+
Sbjct: 375 QAYLTNEYMQRM 386
Score = 63.2 bits (152), Expect = 6e-10
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +3
Query: 18 SAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLR 197
S KVM + E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+
Sbjct: 219 SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 277
Query: 198 SQFQQ 212
F+Q
Sbjct: 278 RTFEQ 282
Score = 48.5 bits (114), Expect = 1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S V+ ++ N SKG+GFV F + A RA+ +MNG ++ G+ ++V + +++R
Sbjct: 122 FGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKER 179
Query: 183 VAHLRSQFQQ 212
A L ++ ++
Sbjct: 180 EAELGARAKE 189
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 90.9 bits (224), Expect = 3e-18
Identities = 45/72 (62%), Positives = 58/72 (80%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
+ NITSAKVM ++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R
Sbjct: 310 YGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEER 368
Query: 183 VAHLRSQFQQRV 218
AHL SQ+ + +
Sbjct: 369 KAHLASQYMRHM 380
Score = 63.2 bits (152), Expect = 6e-10
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGK-IVEGKPLYVALAQKKED 179
+ ITS KVM +KE+ SKGFGFV F + A AV +NGK + EGK LYVA AQKK +
Sbjct: 206 YGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAE 264
Query: 180 RVAHLRSQFQQ 212
R L+ +F++
Sbjct: 265 RQQELKRKFEE 275
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/64 (35%), Positives = 38/64 (59%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV +++ N SKG+GFV F + A ++ ++NG ++ GK +YV +++R
Sbjct: 113 FGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER 171
Query: 183 VAHL 194
L
Sbjct: 172 EKEL 175
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 89.7 bits (221), Expect = 6e-18
Identities = 45/77 (58%), Positives = 60/77 (77%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
+ N+TS+KVMLN + S+GFGFV +S P+EA RA+SEMNGK++ KPLY+ALAQ+KEDR
Sbjct: 355 YGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
Query: 183 VAHLRSQFQQRVHQPQP 233
AHL++ F Q + P P
Sbjct: 414 RAHLQALFSQ-IRAPGP 429
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +3
Query: 12 ITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAH 191
+ S+ V++ ++ S+ FGFV F + A AV +MNG + LYV AQKK +R
Sbjct: 254 VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Query: 192 LRSQFQQ 212
LR +F+Q
Sbjct: 314 LRRKFEQ 320
Score = 37.7 bits (86), Expect = 0.026
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F I S KV ++ SKG+GFV F + A A+ ++NG ++ K ++V ++++R
Sbjct: 159 FGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 84.7 bits (208), Expect = 2e-16
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
+ ITSAKVM EN SKGFGFVCFS P+EAT+A++E N +IV GKPLYVA+AQ+K+ R
Sbjct: 345 YGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 403
Query: 183 VAHLRSQFQQR 215
+ L Q Q R
Sbjct: 404 RSQLAQQIQAR 414
Score = 46.6 bits (109), Expect = 6e-05
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +3
Query: 57 KGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQ 209
KGFGFV + ++A +AV +N + G+ LYV AQKK +R+ L+ Q++
Sbjct: 259 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYE 309
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVA--LAQKKE 176
F +I S+K+ + EN SKGFGFV F A A+ +NG ++ G+ +YVA L++K+
Sbjct: 149 FGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 207
Query: 177 D 179
D
Sbjct: 208 D 208
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F +TS+KVM + N TSKG GFV F+ P+EAT A+S+++GK++E KPLYVA+AQ+KEDR
Sbjct: 341 FGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
Query: 183 VAHLRSQFQQ-RVHQPQPAV 239
L++QF Q R QP+V
Sbjct: 400 RVRLQAQFSQVRPVAMQPSV 419
Score = 59.3 bits (142), Expect = 8e-09
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
+ ITSA VM + E SKGFGFV F D+A RAV +NG + K YV AQKK +R
Sbjct: 238 YGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296
Query: 183 VAHLRSQFQQRVHQ 224
LR +++Q + +
Sbjct: 297 ETELRVRYEQNLKE 310
Score = 43.1 bits (100), Expect = 6e-04
Identities = 20/60 (33%), Positives = 37/60 (61%)
Frame = +3
Query: 3 FRNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 182
F NI S KV ++ SKG+GFV ++ + A +A+ ++NG ++ K +YV ++++R
Sbjct: 147 FGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
Score = 35.4 bits (80), Expect = 0.13
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 12 ITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQK 170
+ + +V + S G+G+V F+ P +A RA+ E+N + GKP+ V + +
Sbjct: 62 VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,916,600
Number of Sequences: 369166
Number of extensions: 1673786
Number of successful extensions: 5323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)