Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G19
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 204 3e-52
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 200 4e-51
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 200 4e-51
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 200 4e-51
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 194 2e-49
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 190 4e-48
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 177 3e-44
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 174 4e-43
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 171 3e-42
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 170 4e-42
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 204 bits (519), Expect = 3e-52
Identities = 102/159 (64%), Positives = 132/159 (83%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVSY++HEDA KAV +NG+ I K I+VGRA KK ERQ EL+ ++E+ +QER+ +
Sbjct: 231 KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNLYIKNL + I+DE+L+ EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT
Sbjct: 291 YQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QRV
Sbjct: 348 KAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 122 bits (306), Expect = 1e-27
Identities = 65/157 (41%), Positives = 95/157 (60%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+ FV ++ E A KA+ +NG ++ D+ ++VGR + ER+ EL A+
Sbjct: 138 KGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G +++DE LK F+ FG S KVM + N SKGFGFV + ++A
Sbjct: 188 -KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDAN 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EMNGK + GK ++V AQKK +R A L+ +F+Q
Sbjct: 246 KAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 78.6 bits (192), Expect = 2e-14
Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N VI+ K I + ++R LR
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPIRI----MWSQRDPSLR-------------- 94
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+ FV F + A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAAD 152
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 200 bits (509), Expect = 4e-51
Identities = 98/159 (61%), Positives = 130/159 (81%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT
Sbjct: 291 YQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 128 bits (321), Expect = 2e-29
Identities = 69/157 (43%), Positives = 96/157 (61%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ E A +A+ +NG ++ D+ ++VGR + ER+ EL AR
Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A
Sbjct: 188 -KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 81.6 bits (200), Expect = 3e-15
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N VI+ K + + ++R LR
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLR-------------- 94
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 200 bits (509), Expect = 4e-51
Identities = 98/159 (61%), Positives = 130/159 (81%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT
Sbjct: 291 YQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 128 bits (322), Expect = 2e-29
Identities = 69/157 (43%), Positives = 96/157 (61%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ E A +A+ +NG ++ D+ ++VGR + ER+ EL AR
Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A
Sbjct: 188 -KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 82.0 bits (201), Expect = 2e-15
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N VI+ K + + ++R LR
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLR-------------- 94
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 200 bits (509), Expect = 4e-51
Identities = 98/159 (61%), Positives = 130/159 (81%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ ++E+ +Q+R+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT
Sbjct: 291 YQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 128 bits (322), Expect = 2e-29
Identities = 69/157 (43%), Positives = 96/157 (61%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ E A +A+ +NG ++ D+ ++VGR + ER+ EL AR
Sbjct: 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A
Sbjct: 188 -KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 82.0 bits (201), Expect = 2e-15
Identities = 50/157 (31%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N VI+ K + + ++R LR
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLR-------------- 94
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 194 bits (494), Expect = 2e-49
Identities = 98/169 (57%), Positives = 131/169 (77%), Gaps = 3/169 (1%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVS++ HEDA KAV+ + G+ + K+++VGRA KK ERQ EL+ ++E+ Q+R+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNLY+KNL + I+DERL+ EF FG ITSAKVM+ E SKGFGFVCFS+P+EAT
Sbjct: 291 YQ-GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---VHQPQPAV 499
+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR V P P +
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVI 396
Score = 126 bits (317), Expect = 7e-29
Identities = 67/157 (42%), Positives = 97/157 (61%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ E A +A++ +NG ++ D+ ++VGR + ER+ EL AR
Sbjct: 138 KGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G+D+NDERLK F +G S KVM + +N SKGFGFV F ++A
Sbjct: 188 -KEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQ 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EM GK + GK ++V AQKK +R L+ +F+Q
Sbjct: 246 KAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 81.6 bits (200), Expect = 3e-15
Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N VI+ GR ++ QR+ R
Sbjct: 53 GYAYVNFQQPADAERALDTMNFDVIK------GRPVRIMWSQRDPSLR------------ 94
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 190 bits (483), Expect = 4e-48
Identities = 94/159 (59%), Positives = 127/159 (79%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK ERQ EL+ +E+ +Q+R+ +
Sbjct: 231 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITR 290
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ VNLY+KNL + I+DERL+ F+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT
Sbjct: 291 YQV-VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEAT 347
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
+AV+EMNG+IV KPLYVALAQ+KE+R A+L +++ QR+
Sbjct: 348 KAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 125 bits (315), Expect = 1e-28
Identities = 68/157 (43%), Positives = 95/157 (60%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ HE A +A+ +NG ++ + ++VG+ + ER+ EL AR
Sbjct: 138 KGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARA---------- 187
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A
Sbjct: 188 -KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQ 245
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV EMNGK + GK +YV AQKK +R L+ F+Q
Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 77.8 bits (190), Expect = 4e-14
Identities = 48/156 (30%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Frame = +2
Query: 8 FGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHK 187
+ +V+++ +DA A++T+N VI+ K + + ++R LR K
Sbjct: 54 YAYVNFQHTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLR--------------K 95
Query: 188 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 364
SGV N+++KNL IN++ L + FGNI S V+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAER 153
Query: 365 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
A+ +MNG ++ G+ ++V + +++R A L ++ ++
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 177 bits (450), Expect = 3e-44
Identities = 88/158 (55%), Positives = 122/158 (77%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
+GFGFV+Y HE A KAV+ LN + + K +YVGRA KK ER+ ELR RYE+ + E++ +
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK 360
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNL+IKNL ++++DERLK+EF+ FG ITSAK+M + E SKGFGFVC++ P+EA
Sbjct: 361 YQ-GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEAN 418
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 475
+AV+EMN +++ GKPLYVALAQ+KE R + L +Q Q R
Sbjct: 419 KAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
Score = 103 bits (257), Expect = 6e-22
Identities = 57/157 (36%), Positives = 88/157 (56%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV + E A A+ +NG ++ DK +YVG + + ERQ ++ A
Sbjct: 208 KGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL----------- 256
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
+ N+YIKNL +I ++ F FG ITS ++ +N+ +GFGFV ++ + A
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS-LVKDQNDKPRGFGFVNYANHECAQ 315
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
+AV E+N K +GK LYV AQKK +R LR +++Q
Sbjct: 316 KAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 66.2 bits (160), Expect = 1e-10
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 3/157 (1%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++ ED KA++ LN +I+ GR + QR+ R T
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIK------GRPCRIMWSQRDPSLRKMGTG------- 168
Query: 185 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 364
N++IKNL I+++ L F+ FG I S KV +++ N +KG+GFV F + + A
Sbjct: 169 ----NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANA 223
Query: 365 AVSEMNGKIVEGKPLYV---ALAQKKEDRVAHLRSQF 466
A+ +NG ++ K +YV ++++ +V L++ F
Sbjct: 224 AIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Score = 53.5 bits (127), Expect = 8e-07
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFV Y E+A KAV +N R++ K +YV A +K R+ +L A+ + Q RLQQ
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Score = 39.3 bits (90), Expect = 0.015
Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Frame = +2
Query: 26 KEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVN-- 199
K+ + A+++ N +E T E Q E +A + E + + N
Sbjct: 8 KQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNAS 67
Query: 200 --------------LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVC 337
LY+ L + + L F G + S +V + S G+ +V
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Query: 338 FSAPDEATRAVSEMNGKIVEGKPLYVALAQK 430
F ++ +A+ E+N +++G+P + +Q+
Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 174 bits (440), Expect = 4e-43
Identities = 87/158 (55%), Positives = 118/158 (74%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFV+Y++HEDA+KAV LN + + +YVGRA KK ER L+ +YE R E++ +
Sbjct: 259 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAK 318
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
++ GVNL++KNL + ++DE+L+ EFA +G ITSAKVM EN SKGFGFVCFS P+EAT
Sbjct: 319 YQ-GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEAT 376
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 475
+A++E N +IV GKPLYVA+AQ+K+ R + L Q Q R
Sbjct: 377 KAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414
Score = 97.8 bits (242), Expect = 4e-20
Identities = 55/156 (35%), Positives = 89/156 (57%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFV ++E A +A++ LNG ++ + IYV + + ER +L E +
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL---------EETKA 216
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
H + NLY+KN+ ++ DE+ + FA FG I SA + + + KGFGFV + ++A
Sbjct: 217 HYT--NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAV 273
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQ 469
+AV +N + G+ LYV AQKK +R+ L+ Q++
Sbjct: 274 KAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYE 309
Score = 79.0 bits (193), Expect = 2e-14
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++ +HE KA+ LN I+ GR + QR+ R
Sbjct: 80 GYAYVNFNDHEAGRKAIEQLNYTPIK------GRLCRIMWSQRDPSLR-----------K 122
Query: 185 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 364
K N++IKNL DI+++ L F++FG+I S+K+ + EN SKGFGFV F A
Sbjct: 123 KGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKE 181
Query: 365 AVSEMNGKIVEGKPLYVA--LAQKKED 439
A+ +NG ++ G+ +YVA L++K+ D
Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERD 208
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFV + E+A KA+ N +++ K +YV A +K R+ +L + + Q R QQ
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQ 421
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 171 bits (433), Expect = 3e-42
Identities = 91/162 (56%), Positives = 125/162 (77%), Gaps = 3/162 (1%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVI-EDKTIYVGRAMKKAERQRELRARYEKTRQERLQ 178
KGFGFV+++ E A AV LNG+ + E K++YV RA KKAERQ+EL+ ++E+ +Q+R
Sbjct: 223 KGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKR-- 280
Query: 179 QHKS--GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPD 352
H+S GVNLY+KNL + I+D+RL+ F+ +GNITSAKVM ++E SKGFGFVCF+A
Sbjct: 281 -HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAAS 338
Query: 353 EATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 478
EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ + +
Sbjct: 339 EATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Score = 117 bits (293), Expect = 4e-26
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV ++ E A +++ +NG ++ K +YVG+ + + ER++EL ++
Sbjct: 130 KGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG-----------EK 178
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
K N+Y+KN D +DE+LK F +G ITS KVM +KE+ SKGFGFV F + A
Sbjct: 179 AKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAE 237
Query: 362 RAVSEMNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQ 472
AV +NGK + EGK LYVA AQKK +R L+ +F++
Sbjct: 238 AAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
Score = 75.5 bits (184), Expect = 2e-13
Identities = 46/151 (30%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+ +V++++ DA +A++T+N ++ +K I + ++R LR
Sbjct: 44 GYAYVNFQQPADAERALDTMNFDLVRNKPIRI----MWSQRDPSLR-------------- 85
Query: 185 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
+SGV N++IKNL I+++ + F+ FGNI S KV +++ N SKG+GFV F + A
Sbjct: 86 RSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAAN 144
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHL 454
++ ++NG ++ GK +YV +++R L
Sbjct: 145 TSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +2
Query: 197 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 376
+LY+ +L D+N+ L +F+ G + S +V + S G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 377 MNGKIVEGKPLYVALAQK 430
MN +V KP+ + +Q+
Sbjct: 63 MNFDLVRNKPIRIMWSQR 80
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 170 bits (431), Expect = 4e-42
Identities = 89/167 (53%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KGFGFV+++ +DA +AV +LNG +DK YVGRA KK+ER+ ELR RYE+ +E +
Sbjct: 255 KGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK 314
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
+S NLY+KNL I+DE+LK F+ FG +TS+KVM + N TSKG GFV F+ P+EAT
Sbjct: 315 FQSS-NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEAT 372
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ-RVHQPQPAV 499
A+S+++GK++E KPLYVA+AQ+KEDR L++QF Q R QP+V
Sbjct: 373 EAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSV 419
Score = 114 bits (286), Expect = 3e-25
Identities = 65/161 (40%), Positives = 90/161 (55%)
Frame = +2
Query: 2 KGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQ 181
KG+GFV Y E A KA+ LNG ++ DK +YVG +++ ER + KT+
Sbjct: 164 KGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD----STANKTKF----- 214
Query: 182 HKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 361
N+Y+KNL D+ LK+ F +G ITSA VM + E SKGFGFV F D+A
Sbjct: 215 ----TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAA 269
Query: 362 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVHQ 484
RAV +NG + K YV AQKK +R LR +++Q + +
Sbjct: 270 RAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 310
Score = 69.7 bits (169), Expect = 1e-11
Identities = 43/146 (29%), Positives = 77/146 (52%)
Frame = +2
Query: 5 GFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQH 184
G+G+V++ +DA +A+ LN + K I R Y R +++
Sbjct: 78 GYGYVNFTNPQDAARAIQELNYIPLYGKPI---------------RVMYSH-RDPSVRRS 121
Query: 185 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 364
+G N++IKNL I+ + L F+ FGNI S KV ++ SKG+GFV ++ + A +
Sbjct: 122 GAG-NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQK 179
Query: 365 AVSEMNGKIVEGKPLYVALAQKKEDR 442
A+ ++NG ++ K +YV ++++R
Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQER 205
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 197 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 376
+LY+ +L ++ D +L F G + + +V + S G+G+V F+ P +A RA+ E
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 377 MNGKIVEGKPLYVALAQK 430
+N + GKP+ V + +
Sbjct: 97 LNYIPLYGKPIRVMYSHR 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,480,590
Number of Sequences: 369166
Number of extensions: 2033707
Number of successful extensions: 7351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7143
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)