Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D02
(231 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 62 5e-10
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 61 9e-10
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 60 2e-09
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 60 2e-09
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 60 2e-09
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 58 8e-09
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 54 1e-07
sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperp... 44 9e-05
sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperp... 44 9e-05
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 43 3e-04
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 61.6 bits (148), Expect = 5e-10
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGGES 134
GKITGM LE+DN+ELLYM+E+ SLR K+DEA+ VL AH+ E+
Sbjct: 574 GKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEA 617
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 60.8 bits (146), Expect = 9e-10
Identities = 27/44 (61%), Positives = 37/44 (84%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGGES 134
GKITGM LE+DN+ELL+M+E+ SLR+K+DEA+ VL AH+ E+
Sbjct: 577 GKITGMLLEIDNSELLHMLESPESLRLKVDEAVAVLQAHQAKEA 620
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGGES 134
GKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+ E+
Sbjct: 579 GKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGGES 134
GKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+ E+
Sbjct: 579 GKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHKGGES 134
GKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH+ E+
Sbjct: 579 GKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 622
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 57.8 bits (138), Expect = 8e-09
Identities = 26/39 (66%), Positives = 33/39 (84%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAH 119
GKITGM LE+DN+ELL+M+E+ SLR K+DEA+ VL AH
Sbjct: 588 GKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 53.5 bits (127), Expect = 1e-07
Identities = 22/40 (55%), Positives = 34/40 (85%)
Frame = +3
Query: 3 GKITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAHK 122
GKITGM LE++N+ELL+MIE++ +L+ K++EA+ VL H+
Sbjct: 589 GKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQVHR 628
>sp|O95071|EDD1_HUMAN Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
(hHYD) (Progestin-induced protein)
Length = 2799
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +3
Query: 6 KITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAH 119
KITGM LEL A+LL ++ +E+SLR ++DEA+ ++ AH
Sbjct: 2415 KITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>sp|Q80TP3|EDD1_MOUSE Ubiquitin--protein ligase EDD1 (Hyperplastic discs protein homolog)
Length = 2792
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +3
Query: 6 KITGMFLELDNAELLYMIENENSLRMKIDEALVVLNAH 119
KITGM LEL A+LL ++ +E+SLR ++DEA+ ++ AH
Sbjct: 2409 KITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
5)
Length = 668
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/35 (51%), Positives = 28/35 (80%)
Frame = +3
Query: 6 KITGMFLELDNAELLYMIENENSLRMKIDEALVVL 110
K+TGM LE+D AE+L+++E+ +L+ K+ EAL VL
Sbjct: 612 KVTGMLLEMDQAEILHLLESPEALKAKVSEALDVL 646
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,739,788
Number of Sequences: 369166
Number of extensions: 340534
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)