Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N15
(804 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 128 2e-29
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 127 5e-29
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 126 8e-29
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 126 8e-29
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 126 8e-29
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 120 4e-27
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 114 3e-25
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 114 3e-25
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 112 2e-24
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 110 4e-24
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 128 bits (322), Expect = 2e-29
Identities = 64/93 (68%), Positives = 80/93 (86%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LYIKNL + I+DE+L+ EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG+IV KPLYVALAQ+KE+R AHL +Q+ QRV
Sbjct: 354 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 87.4 bits (215), Expect = 4e-17
Identities = 44/91 (48%), Positives = 61/91 (67%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G +++DE LK F+ FG S KVM + N SKGFGFV + ++A +AV EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + GK ++V AQKK +R A L+ +F+Q
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/91 (32%), Positives = 57/91 (62%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+ FV F + A +A+ +M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ + ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 619 YQYPIQDNQTMMNPDQMKMPDIESQ-IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAG 795
Y ++ + P Q P + Q + T S +A A E KQ+LGE+++PL+
Sbjct: 525 YASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS 584
Query: 796 DMA 804
++A
Sbjct: 585 NLA 587
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 127 bits (318), Expect = 5e-29
Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+DERL+ EF FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---VHQPQPAV 302
NG+IV KPLYVALAQ+KE+R AHL +Q+ QR V P P +
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVI 396
Score = 88.6 bits (218), Expect = 2e-17
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G+D+NDERLK F +G S KVM + +N SKGFGFV F ++A +AV EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
GK + GK ++V AQKK +R L+ +F+Q
Sbjct: 252 YGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/91 (35%), Positives = 58/91 (63%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A RA+ +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ + ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 571 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 750
PQY A R ++ Q + Q ++ ++ Q L T S +A A E KQ
Sbjct: 508 PQYKYAAGVRNQQHLNTQPQVAMQQPAVH--------VQGQEPL-TASMLAAAPPQEQKQ 558
Query: 751 LLGEKIYPLV 780
+LGE+++PL+
Sbjct: 559 MLGERLFPLI 568
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 126 bits (316), Expect = 8e-29
Identities = 62/93 (66%), Positives = 78/93 (83%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 90.9 bits (224), Expect = 4e-18
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +AV EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 64.7 bits (156), Expect = 3e-10
Identities = 32/91 (35%), Positives = 58/91 (63%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A RA+ +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ + ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
Score = 33.9 bits (76), Expect = 0.53
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +1
Query: 571 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 750
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 751 LLGEKIYPLV 780
+LGE+++PL+
Sbjct: 561 MLGERLFPLI 570
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 126 bits (316), Expect = 8e-29
Identities = 62/93 (66%), Positives = 78/93 (83%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 90.9 bits (224), Expect = 4e-18
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +AV EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/91 (35%), Positives = 58/91 (63%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A RA+ +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ + ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Score = 33.9 bits (76), Expect = 0.53
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +1
Query: 571 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 750
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 751 LLGEKIYPLV 780
+LGE+++PL+
Sbjct: 561 MLGERLFPLI 570
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 126 bits (316), Expect = 8e-29
Identities = 62/93 (66%), Positives = 78/93 (83%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 90.9 bits (224), Expect = 4e-18
Identities = 47/91 (51%), Positives = 61/91 (67%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +AV EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 65.1 bits (157), Expect = 2e-10
Identities = 32/91 (35%), Positives = 58/91 (63%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A RA+ +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ + ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Score = 33.9 bits (76), Expect = 0.53
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +1
Query: 571 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 750
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 751 LLGEKIYPLV 780
+LGE+++PL+
Sbjct: 561 MLGERLFPLI 570
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 120 bits (301), Expect = 4e-27
Identities = 59/93 (63%), Positives = 77/93 (82%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+DERL+ F+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+EM
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG+IV KPLYVALAQ+KE+R A+L +++ QR+
Sbjct: 354 NGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 90.1 bits (222), Expect = 6e-18
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +AV EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + GK +YV AQKK +R L+ F+Q
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 64.3 bits (155), Expect = 4e-10
Identities = 31/91 (34%), Positives = 57/91 (62%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+++KNL IN++ L + FGNI S V+ ++ N SKG+GFV F + A RA+ +M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG ++ G+ ++V + +++R A L ++ ++
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
Score = 30.8 bits (68), Expect = 4.5
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +1
Query: 706 TTSKIANADSMEAKQLLGEKIYPLV 780
T S++A+A + KQ+LGE+++PL+
Sbjct: 541 TASRLASAPPQKQKQMLGERLFPLI 565
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 114 bits (285), Expect = 3e-25
Identities = 56/98 (57%), Positives = 77/98 (78%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + ++DE+LK F+ +GN+TS+KVMLN + S+GFGFV +S P+EA RA+SEM
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEM 392
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVHQPQP 296
NGK++ KPLY+ALAQ+KEDR AHL++ F Q + P P
Sbjct: 393 NGKMIGRKPLYIALAQRKEDRRAHLQALFSQ-IRAPGP 429
Score = 70.1 bits (170), Expect = 7e-12
Identities = 39/91 (42%), Positives = 55/91 (60%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+Y+KNL +I ++ L+ F FG I+SA VM ++ N S+ FGFV F + A AV +M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NG + LYV AQKK +R LR +F+Q
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Score = 53.1 bits (126), Expect = 9e-07
Identities = 27/81 (33%), Positives = 48/81 (59%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FG I S KV ++ SKG+GFV F + A A+ ++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKL 196
Query: 183 NGKIVEGKPLYVALAQKKEDR 245
NG ++ K ++V ++++R
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER 217
Score = 32.0 bits (71), Expect = 2.0
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 709 TSKIANADSMEAKQLLGEKIYPLVSKH 789
TS +A+A + ++LGE++YPLV +H
Sbjct: 576 TSSLASASPADRTRMLGEQLYPLVERH 602
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 114 bits (285), Expect = 3e-25
Identities = 56/93 (60%), Positives = 75/93 (80%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KNL + I+D+RL+ F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV+E+
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTEL 347
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 281
NG++V KPLYVALAQ+KE+R AHL SQ+ + +
Sbjct: 348 NGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Score = 84.7 bits (208), Expect = 3e-16
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+Y+KN D +DE+LK F +G ITS KVM +KE+ SKGFGFV F + A AV +
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 183 NGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
NGK + EGK LYVA AQKK +R L+ +F++
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
Score = 60.5 bits (145), Expect = 5e-09
Identities = 30/85 (35%), Positives = 52/85 (61%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ + F+ FGNI S KV +++ N SKG+GFV F + A ++ ++
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKV 150
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHL 257
NG ++ GK +YV +++R L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+ +L D+N+ L +F+ G + S +V + S G+ +V F P +A RA+ M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 183 NGKIVEGKPLYVALAQK 233
N +V KP+ + +Q+
Sbjct: 64 NFDLVRNKPIRIMWSQR 80
Score = 41.6 bits (96), Expect = 0.003
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Frame = +1
Query: 517 QNRNARPITGNVQLNQPRPQYN--IVANGRQAGNMMYQY-------PI-QDNQTMMNPDQ 666
+N AR ITG Q P Q +A G Q Y+Y P+ Q +QT P Q
Sbjct: 488 RNTGARAITGQ-QTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQ 546
Query: 667 MKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMA 804
++ + E I S +ANA E KQ+LGE++YP++ ++A
Sbjct: 547 LQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLA 588
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 112 bits (279), Expect = 2e-24
Identities = 54/92 (58%), Positives = 74/92 (80%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
L+IKNL ++++DERLK+EF+ FG ITSAK+M + E SKGFGFVC++ P+EA +AV+EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 278
N +++ GKPLYVALAQ+KE R + L +Q Q R
Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
Score = 72.0 bits (175), Expect = 2e-12
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
+YIKNL +I ++ F FG ITS ++ +N+ +GFGFV ++ + A +AV E+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLS-LVKDQNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 275
N K +GK LYV AQKK +R LR +++Q
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 55.8 bits (133), Expect = 1e-07
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL I+++ L F+ FG I S KV +++ N +KG+GFV F + + A A+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHV 228
Query: 183 NGKIVEGKPLYV---ALAQKKEDRVAHLRSQF 269
NG ++ K +YV ++++ +V L++ F
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Score = 38.1 bits (87), Expect = 0.028
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+ L + + L F G + S +V + S G+ +V F ++ +A+ E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 183 NGKIVEGKPLYVALAQK 233
N +++G+P + +Q+
Sbjct: 142 NYTLIKGRPCRIMWSQR 158
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 110 bits (275), Expect = 4e-24
Identities = 54/92 (58%), Positives = 71/92 (77%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
L++KNL + ++DE+L+ EFA +G ITSAKVM EN SKGFGFVCFS P+EAT+A++E
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 278
N +IV GKPLYVA+AQ+K+ R + L Q Q R
Sbjct: 383 NQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414
Score = 67.4 bits (163), Expect = 4e-11
Identities = 34/90 (37%), Positives = 55/90 (61%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
LY+KN+ ++ DE+ + FA FG I SA + + + KGFGFV + ++A +AV +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 183 NGKIVEGKPLYVALAQKKEDRVAHLRSQFQ 272
N + G+ LYV AQKK +R+ L+ Q++
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYE 309
Score = 65.5 bits (158), Expect = 2e-10
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSEM 182
++IKNL DI+++ L F++FG+I S+K+ + EN SKGFGFV F A A+ +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 183 NGKIVEGKPLYVA--LAQKKED 242
NG ++ G+ +YVA L++K+ D
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERD 208
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,442,365
Number of Sequences: 369166
Number of extensions: 1963049
Number of successful extensions: 6066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6004
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)