Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_F10
(316 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 87 1e-17
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 86 3e-17
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 86 3e-17
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 86 3e-17
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 86 3e-17
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 84 1e-16
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 82 4e-16
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 66 2e-11
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 62 4e-10
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 59 3e-09
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/77 (51%), Positives = 58/77 (75%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S++A+A + KQ+LGE+++PL+ +AGKITGM LE+DN+ELLYM+E+ SLR
Sbjct: 541 TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRS 600
Query: 233 KIDEALVVLNAHKGGES 283
K+DEA+ VL AH+ E+
Sbjct: 601 KVDEAVAVLQAHQAKEA 617
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 85.9 bits (211), Expect = 3e-17
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS 605
Query: 233 KIDEALVVLNAHKGGES 283
K+DEA+ VL AH+ E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 85.9 bits (211), Expect = 3e-17
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS 605
Query: 233 KIDEALVVLNAHKGGES 283
K+DEA+ VL AH+ E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 85.5 bits (210), Expect = 3e-17
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S +A A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR+
Sbjct: 544 TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRL 603
Query: 233 KIDEALVVLNAHKGGES 283
K+DEA+ VL AH+ E+
Sbjct: 604 KVDEAVAVLQAHQAKEA 620
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 85.5 bits (210), Expect = 3e-17
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S +A+A E KQ+LGE+++PL+ +AGKITGM LE+DN+ELL+M+E+ SLR
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRS 605
Query: 233 KIDEALVVLNAHKGGES 283
K+DEA+ VL AH+ E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 84.0 bits (206), Expect = 1e-16
Identities = 39/72 (54%), Positives = 54/72 (75%)
Frame = +2
Query: 53 TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 232
T S +A A E KQ+LGE+++PL+ ++AGKITGM LE+DN+ELL+M+E+ SLR
Sbjct: 555 TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRS 614
Query: 233 KIDEALVVLNAH 268
K+DEA+ VL AH
Sbjct: 615 KVDEAVAVLQAH 626
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 82.0 bits (201), Expect = 4e-16
Identities = 39/89 (43%), Positives = 62/89 (69%)
Frame = +2
Query: 5 PDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELD 184
P Q++ + E I S +ANA E KQ+LGE++YP++ ++AGKITGM LE++
Sbjct: 544 PQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIE 599
Query: 185 NAELLYMIENENSLRMKIDEALVVLNAHK 271
N+ELL+MIE++ +L+ K++EA+ VL H+
Sbjct: 600 NSELLHMIEDQEALKAKVEEAVAVLQVHR 628
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 66.2 bits (160), Expect = 2e-11
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +2
Query: 56 TSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMK 235
TS +A+A + ++LGE++YPLV +H K+TGM LE+D AE+L+++E+ +L+ K
Sbjct: 576 TSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSK 635
Query: 236 IDEALVVL 259
+ EAL VL
Sbjct: 636 VSEALDVL 643
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = +2
Query: 59 SKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKI 238
S ++NA + + +LGE +YPLV + + A K+TGM LE+D E+L+++E+ +L+ K+
Sbjct: 545 SNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV 604
Query: 239 DEALVVLNAHKGG 277
EA+ VL + G
Sbjct: 605 AEAMDVLRSVAAG 617
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +2
Query: 20 MPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELL 199
+P + + T + +A KQ+LGE +YP V ++GKITGM LE+ N+ELL
Sbjct: 562 VPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELL 621
Query: 200 YMIENENSLRMKIDEALVVL 259
++E++++L +++EA+ VL
Sbjct: 622 ELLEDDSALNERVNEAIGVL 641
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,515,463
Number of Sequences: 369166
Number of extensions: 558019
Number of successful extensions: 1461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)