Planarian EST Database


Dr_sW_027_D10

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_027_D10
         (426 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H361|PABP3_HUMAN  Polyadenylate-binding protein 3 (Poly...    87   1e-17
sp|P29341|PABP1_MOUSE  Polyadenylate-binding protein 1 (Poly...    86   3e-17
sp|Q9EPH8|PABP1_RAT  Polyadenylate-binding protein 1 (Poly(A...    86   3e-17
sp|P20965|PABP1_XENLA  Polyadenylate-binding protein 1 (Poly...    86   4e-17
sp|P11940|PABP1_HUMAN  Polyadenylate-binding protein 1 (Poly...    86   4e-17
sp|Q13310|PABP4_HUMAN  Polyadenylate-binding protein 4 (Poly...    84   1e-16
sp|P21187|PABP_DROME  Polyadenylate-binding protein (Poly(A)...    82   5e-16
sp|O64380|PABP3_ARATH  Polyadenylate-binding protein 3 (Poly...    66   3e-11
sp|P42731|PABP2_ARATH  Polyadenylate-binding protein 2 (Poly...    62   5e-10
sp|P31209|PABP_SCHPO  Polyadenylate-binding protein (Poly(A)...    59   3e-09
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
           3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 40/77 (51%), Positives = 58/77 (75%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S++A+A   + KQ+LGE+++PL+      +AGKITGM LE+DN+ELLYM+E+  SLR 
Sbjct: 541 TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRS 600

Query: 237 KIDEALVVLNAHKGGES 287
           K+DEA+ VL AH+  E+
Sbjct: 601 KVDEAVAVLQAHQAKEA 617
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S +A+A   E KQ+LGE+++PL+      +AGKITGM LE+DN+ELL+M+E+  SLR 
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS 605

Query: 237 KIDEALVVLNAHKGGES 287
           K+DEA+ VL AH+  E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S +A+A   E KQ+LGE+++PL+      +AGKITGM LE+DN+ELL+M+E+  SLR 
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS 605

Query: 237 KIDEALVVLNAHKGGES 287
           K+DEA+ VL AH+  E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 633

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S +A A   E KQ+LGE+++PL+      +AGKITGM LE+DN+ELL+M+E+  SLR+
Sbjct: 544 TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRL 603

Query: 237 KIDEALVVLNAHKGGES 287
           K+DEA+ VL AH+  E+
Sbjct: 604 KVDEAVAVLQAHQAKEA 620
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
 sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
           1)
          Length = 636

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S +A+A   E KQ+LGE+++PL+      +AGKITGM LE+DN+ELL+M+E+  SLR 
Sbjct: 546 TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRS 605

Query: 237 KIDEALVVLNAHKGGES 287
           K+DEA+ VL AH+  E+
Sbjct: 606 KVDEAVAVLQAHQAKEA 622
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
           4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 39/72 (54%), Positives = 54/72 (75%)
 Frame = +3

Query: 57  TTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRM 236
           T S +A A   E KQ+LGE+++PL+     ++AGKITGM LE+DN+ELL+M+E+  SLR 
Sbjct: 555 TASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRS 614

Query: 237 KIDEALVVLNAH 272
           K+DEA+ VL AH
Sbjct: 615 KVDEAVAVLQAH 626
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 634

 Score = 82.0 bits (201), Expect = 5e-16
 Identities = 39/89 (43%), Positives = 62/89 (69%)
 Frame = +3

Query: 9   PDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELD 188
           P Q++  + E  I     S +ANA   E KQ+LGE++YP++     ++AGKITGM LE++
Sbjct: 544 PQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIE 599

Query: 189 NAELLYMIENENSLRMKIDEALVVLNAHK 275
           N+ELL+MIE++ +L+ K++EA+ VL  H+
Sbjct: 600 NSELLHMIEDQEALKAKVEEAVAVLQVHR 628
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
           3)
          Length = 660

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 30/68 (44%), Positives = 48/68 (70%)
 Frame = +3

Query: 60  TSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMK 239
           TS +A+A   +  ++LGE++YPLV +H      K+TGM LE+D AE+L+++E+  +L+ K
Sbjct: 576 TSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSK 635

Query: 240 IDEALVVL 263
           + EAL VL
Sbjct: 636 VSEALDVL 643
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
           2)
          Length = 629

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 28/73 (38%), Positives = 48/73 (65%)
 Frame = +3

Query: 63  SKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELLYMIENENSLRMKI 242
           S ++NA   + + +LGE +YPLV +   + A K+TGM LE+D  E+L+++E+  +L+ K+
Sbjct: 545 SNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKV 604

Query: 243 DEALVVLNAHKGG 281
            EA+ VL +   G
Sbjct: 605 AEAMDVLRSVAAG 617
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 653

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 29/80 (36%), Positives = 50/80 (62%)
 Frame = +3

Query: 24  MPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKITGMFLELDNAELL 203
           +P +    +  T + +A       KQ+LGE +YP V      ++GKITGM LE+ N+ELL
Sbjct: 562 VPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELL 621

Query: 204 YMIENENSLRMKIDEALVVL 263
            ++E++++L  +++EA+ VL
Sbjct: 622 ELLEDDSALNERVNEAIGVL 641
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,983,395
Number of Sequences: 369166
Number of extensions: 736541
Number of successful extensions: 1735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)