Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H14
(974 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 224 4e-58
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 219 1e-56
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 219 1e-56
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 219 1e-56
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 214 4e-55
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 209 1e-53
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 192 2e-48
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 192 2e-48
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 191 3e-48
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytopla... 188 2e-47
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 224 bits (570), Expect = 4e-58
Identities = 112/179 (62%), Positives = 145/179 (81%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F Q+G+ +S KVM D G SKGFGFVSY++HEDA KAV +NG+ I K I+VGRA KK
Sbjct: 211 FSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ ++E+ +QER+ +++ GVNLYIKNL + I+DE+L+ EF+ FG+ITSAKVML
Sbjct: 271 ERQAELKRKFEQLKQERISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 538
E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QRV
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRV 386
Score = 136 bits (343), Expect = 8e-32
Identities = 74/177 (41%), Positives = 107/177 (60%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV+ D+ G SKG+ FV ++ E A KA+ +NG ++ D+ ++VGR +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ EL A+ K N+YIKN G +++DE LK F+ FG S KVM
Sbjct: 178 EREAELGAK-----------AKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM-RD 225
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
N SKGFGFV + ++A +AV EMNGK + GK ++V AQKK +R A L+ +F+Q
Sbjct: 226 PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 82.0 bits (201), Expect = 2e-15
Identities = 55/179 (30%), Positives = 98/179 (54%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G ++S +V D S G+ +V++++ DA +A++T+N VI+ K I +
Sbjct: 31 FSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI----MW 86
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR KSGV N++IKNL I+++ L F+ FGNI S KV+
Sbjct: 87 SQRDPSLR--------------KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+ FV F + A +A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 219 bits (557), Expect = 1e-56
Identities = 107/179 (59%), Positives = 143/179 (79%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F ++G +S KVM D+ G SKGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 538
E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 142 bits (358), Expect = 1e-33
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV+ D+ G SKG+GFV ++ E A +A+ +NG ++ D+ ++VGR +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQK 177
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ EL AR K N+YIKN G D++DERLK F FG S KVM +
Sbjct: 178 EREAELGAR-----------AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD- 225
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 85.5 bits (210), Expect = 2e-16
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G I+S +V D S G+ +V++++ DA +A++T+N VI+ K + +
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MW 86
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR KSGV N++IKNL I+++ L F+ FGNI S KV+
Sbjct: 87 SQRDPSLR--------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 219 bits (557), Expect = 1e-56
Identities = 107/179 (59%), Positives = 143/179 (79%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F ++G +S KVM D+ G SKGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 538
E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 142 bits (359), Expect = 1e-33
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV+ D+ G SKG+GFV ++ E A +A+ +NG ++ D+ ++VGR +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ EL AR K N+YIKN G D++DERLK F FG S KVM +
Sbjct: 178 EREAELGAR-----------AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD- 225
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 85.9 bits (211), Expect = 2e-16
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G I+S +V D S G+ +V++++ DA +A++T+N VI+ K + +
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MW 86
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR KSGV N++IKNL I+++ L F+ FGNI S KV+
Sbjct: 87 SQRDPSLR--------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 219 bits (557), Expect = 1e-56
Identities = 107/179 (59%), Positives = 143/179 (79%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F ++G +S KVM D+ G SKGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ ++E+ +Q+R+ +++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+
Sbjct: 271 ERQTELKRKFEQMKQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 538
E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 142 bits (359), Expect = 1e-33
Identities = 78/177 (44%), Positives = 109/177 (61%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV+ D+ G SKG+GFV ++ E A +A+ +NG ++ D+ ++VGR +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ EL AR K N+YIKN G D++DERLK F FG S KVM +
Sbjct: 178 EREAELGAR-----------AKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD- 225
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 85.9 bits (211), Expect = 2e-16
Identities = 57/179 (31%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G I+S +V D S G+ +V++++ DA +A++T+N VI+ K + +
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MW 86
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR KSGV N++IKNL I+++ L F+ FGNI S KV+
Sbjct: 87 SQRDPSLR--------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 214 bits (544), Expect = 4e-55
Identities = 108/189 (57%), Positives = 143/189 (75%), Gaps = 3/189 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +YG +S KVM D G SKGFGFVS++ HEDA KAV+ + G+ + K+++VGRA KK
Sbjct: 211 FGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ ++E+ Q+R+ +++ GVNLY+KNL + I+DERL+ EF FG ITSAKVM+
Sbjct: 271 ERQTELKRKFEQMNQDRITRYQ-GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR-- 535
E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMA 387
Query: 536 -VHQPQPAV 559
V P P +
Sbjct: 388 SVRVPNPVI 396
Score = 140 bits (354), Expect = 4e-33
Identities = 76/177 (42%), Positives = 110/177 (62%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV+ D+ G SKG+GFV ++ E A +A++ +NG ++ D+ ++VGR +
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ EL AR K N+YIKN G+D+NDERLK F +G S KVM +
Sbjct: 178 EREAELGAR-----------AKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD- 225
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+N SKGFGFV F ++A +AV EM GK + GK ++V AQKK +R L+ +F+Q
Sbjct: 226 DNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 85.5 bits (210), Expect = 2e-16
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G I+S +V D S G+ +V++++ DA +A++T+N VI+ GR ++
Sbjct: 31 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK------GRPVRI 84
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
QR+ R KSGV N++IKNL I+++ L F+ FGNI S KV+
Sbjct: 85 MWSQRDPSLR------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+GFV F + A RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 209 bits (531), Expect = 1e-53
Identities = 103/179 (57%), Positives = 140/179 (78%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F ++G +S KVM D+ G SKGFGFVS++ HEDA KAV+ +NG+ + K IYVGRA KK
Sbjct: 211 FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ EL+ +E+ +Q+R+ +++ VNLY+KNL + I+DERL+ F+ FG ITSAKVM+
Sbjct: 271 ERQTELKRTFEQMKQDRITRYQV-VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM-- 327
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV 538
E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R A+L +++ QR+
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 136 bits (342), Expect = 1e-31
Identities = 75/174 (43%), Positives = 106/174 (60%)
Frame = +2
Query: 11 YGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQ 190
+G I+S V+ D+ G SKG+GFV ++ HE A +A+ +NG ++ + ++VG+ + ER+
Sbjct: 122 FGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKERE 180
Query: 191 RELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENN 370
EL AR K N+YIKN G D++DERLK F FG S KVM + E+
Sbjct: 181 AELGAR-----------AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESG 228
Query: 371 TSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ F+Q
Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 82.4 bits (202), Expect = 2e-15
Identities = 54/179 (30%), Positives = 96/179 (53%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G I+S ++ D S + +V+++ +DA A++T+N VI+ K + +
Sbjct: 31 FSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRI----MW 86
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR KSGV N+++KNL IN++ L + FGNI S V+
Sbjct: 87 SQRDPSLR--------------KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+ N SKG+GFV F + A RA+ +MNG ++ G+ ++V + +++R A L ++ ++
Sbjct: 133 --DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2)
Length = 629
Score = 192 bits (487), Expect = 2e-48
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 1/187 (0%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +YG+I SA VM D EG SKGFGFV+++ +DA +AV +LNG +DK YVGRA KK+
Sbjct: 235 FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ ELR RYE+ +E + +S NLY+KNL I+DE+LK F+ FG +TS+KVM
Sbjct: 295 ERETELRVRYEQNLKEAADKFQSS-NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM-RD 352
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ-RV 538
N TSKG GFV F+ P+EAT A+S+++GK++E KPLYVA+AQ+KEDR L++QF Q R
Sbjct: 353 PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRP 412
Query: 539 HQPQPAV 559
QP+V
Sbjct: 413 VAMQPSV 419
Score = 135 bits (341), Expect = 1e-31
Identities = 76/181 (41%), Positives = 102/181 (56%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G IVS KV VD G SKG+GFV Y E A KA+ LNG ++ DK +YVG +++
Sbjct: 144 FSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ 203
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER + KT+ N+Y+KNL D+ LK+ F +G ITSA VM +
Sbjct: 204 ERD----STANKTK---------FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG 250
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVH 541
E SKGFGFV F D+A RAV +NG + K YV AQKK +R LR +++Q +
Sbjct: 251 EGK-SKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLK 309
Query: 542 Q 544
+
Sbjct: 310 E 310
Score = 75.1 bits (183), Expect = 3e-13
Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 1/168 (0%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F Q G +V+ +V D S G+G+V++ +DA +A+ LN + K I
Sbjct: 56 FGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPI-------- 107
Query: 179 AERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLN 358
R Y R +++ +G N++IKNL I+ + L F+ FGNI S KV ++
Sbjct: 108 -------RVMYSH-RDPSVRRSGAG-NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD 158
Query: 359 KENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDR 502
+ SKG+GFV ++ + A +A+ ++NG ++ K +YV ++++R
Sbjct: 159 -SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQER 205
Score = 48.5 bits (114), Expect = 3e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 257 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 436
+LY+ +L ++ D +L F G + + +V + S G+G+V F+ P +A RA+ E
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 437 MNGKIVEGKPLYVALAQK 490
+N + GKP+ V + +
Sbjct: 97 LNYIPLYGKPIRVMYSHR 114
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 192 bits (487), Expect = 2e-48
Identities = 102/182 (56%), Positives = 139/182 (76%), Gaps = 3/182 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVI-EDKTIYVGRAMKK 178
FE YG+I S KVM ++G SKGFGFV+++ E A AV LNG+ + E K++YV RA KK
Sbjct: 203 FEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262
Query: 179 AERQRELRARYEKTRQERLQQHKS--GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 352
AERQ+EL+ ++E+ +Q+R H+S GVNLY+KNL + I+D+RL+ F+ +GNITSAKVM
Sbjct: 263 AERQQELKRKFEELKQKR---HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVM 319
Query: 353 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ +
Sbjct: 320 TDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMR 378
Query: 533 RV 538
+
Sbjct: 379 HM 380
Score = 138 bits (348), Expect = 2e-32
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 1/178 (0%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I+S KV D++GNSKG+GFV ++ E A +++ +NG ++ K +YVG+ + +
Sbjct: 110 FSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRK 169
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER++EL ++ K N+Y+KN D +DE+LK F +G ITS KVM +K
Sbjct: 170 EREKELG-----------EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SK 217
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
E+ SKGFGFV F + A AV +NGK + EGK LYVA AQKK +R L+ +F++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
Score = 79.0 bits (193), Expect = 2e-14
Identities = 52/173 (30%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G ++S +V D S G+ +V++++ DA +A++T+N ++ +K I +
Sbjct: 22 FSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRI----MW 77
Query: 179 AERQRELRARYEKTRQERLQQHKSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVML 355
++R LR +SGV N++IKNL I+++ + F+ FGNI S KV
Sbjct: 78 SQRDPSLR--------------RSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123
Query: 356 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHL 514
+++ N SKG+GFV F + A ++ ++NG ++ GK +YV +++R L
Sbjct: 124 DEKGN-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +2
Query: 257 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 436
+LY+ +L D+N+ L +F+ G + S +V + S G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 437 MNGKIVEGKPLYVALAQK 490
MN +V KP+ + +Q+
Sbjct: 63 MNFDLVRNKPIRIMWSQR 80
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 191 bits (485), Expect = 3e-48
Identities = 95/178 (53%), Positives = 133/178 (74%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F Q+GEI S ++ D+ +GFGFV+Y HE A KAV+ LN + + K +YVGRA KK
Sbjct: 281 FGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKH 340
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER+ ELR RYE+ + E++ +++ GVNL+IKNL ++++DERLK+EF+ FG ITSAK+M +
Sbjct: 341 EREEELRKRYEQMKLEKMNKYQ-GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD- 398
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 535
E SKGFGFVC++ P+EA +AV+EMN +++ GKPLYVALAQ+KE R + L +Q Q R
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR 456
Score = 124 bits (310), Expect = 5e-28
Identities = 67/177 (37%), Positives = 103/177 (58%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G+I+S KV VD+ GN+KG+GFV + E A A+ +NG ++ DK +YVG + +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ERQ ++ A + N+YIKNL +I ++ F FG ITS ++
Sbjct: 248 ERQSKVEA-----------LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS-LVKD 295
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 532
+N+ +GFGFV ++ + A +AV E+N K +GK LYV AQKK +R LR +++Q
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 75.5 bits (184), Expect = 2e-13
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G I SAK+M D++G SKGFGFV Y E+A KAV +N R++ K +YV A +K
Sbjct: 384 FSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
Query: 182 ERQRELRARYEKTRQERLQQ 241
R+ +L A+ + Q RLQQ
Sbjct: 444 VRRSQLEAQIQARNQFRLQQ 463
Score = 70.1 bits (170), Expect = 9e-12
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 4/179 (2%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G + S +V D S G+ +V++ ED KA++ LN +I+ GR +
Sbjct: 100 FNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIK------GRPCRI 153
Query: 179 AERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLN 358
QR+ R T N++IKNL I+++ L F+ FG I S KV ++
Sbjct: 154 MWSQRDPSLRKMGTG-----------NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD 202
Query: 359 KENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYV---ALAQKKEDRVAHLRSQF 526
+ N +KG+GFV F + + A A+ +NG ++ K +YV ++++ +V L++ F
Sbjct: 203 ELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Score = 39.3 bits (90), Expect = 0.017
Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Frame = +2
Query: 86 KEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKAERQRELRARYEKTRQERLQQHKSGVN-- 259
K+ + A+++ N +E T E Q E +A + E + + N
Sbjct: 8 KQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNAS 67
Query: 260 --------------LYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVC 397
LY+ L + + L F G + S +V + S G+ +V
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVN 127
Query: 398 FSAPDEATRAVSEMNGKIVEGKPLYVALAQK 490
F ++ +A+ E+N +++G+P + +Q+
Sbjct: 128 FHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
Length = 577
Score = 188 bits (478), Expect = 2e-47
Identities = 95/178 (53%), Positives = 130/178 (73%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F ++G IVSA + D +G KGFGFV+Y++HEDA+KAV LN + + +YVGRA KK
Sbjct: 239 FAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN 298
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER L+ +YE R E++ +++ GVNL++KNL + ++DE+L+ EFA +G ITSAKVM
Sbjct: 299 ERMHVLKKQYEAYRLEKMAKYQ-GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RT 356
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR 535
EN SKGFGFVCFS P+EAT+A++E N +IV GKPLYVA+AQ+K+ R + L Q Q R
Sbjct: 357 ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR 414
Score = 116 bits (291), Expect = 8e-26
Identities = 63/176 (35%), Positives = 103/176 (58%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F +G+I+S+K+ D+ G SKGFGFV ++E A +A++ LNG ++ + IYV + +
Sbjct: 146 FSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRK 205
Query: 182 ERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 361
ER +L E + H + NLY+KN+ ++ DE+ + FA FG I SA + +
Sbjct: 206 ERDSQL---------EETKAHYT--NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 254
Query: 362 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQ 529
+ KGFGFV + ++A +AV +N + G+ LYV AQKK +R+ L+ Q++
Sbjct: 255 DGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYE 309
Score = 82.0 bits (201), Expect = 2e-15
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDK-EGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKK 178
F G + S +V D S G+ +V++ +HE KA+ LN I+ GR +
Sbjct: 58 FSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIK------GRLCRI 111
Query: 179 AERQRELRARYEKTRQERLQQHKSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLN 358
QR+ R K N++IKNL DI+++ L F++FG+I S+K+ +
Sbjct: 112 MWSQRDPSLR-----------KKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD 160
Query: 359 KENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVA--LAQKKED 499
EN SKGFGFV F A A+ +NG ++ G+ +YVA L++K+ D
Sbjct: 161 -ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERD 208
Score = 64.7 bits (156), Expect = 4e-10
Identities = 33/80 (41%), Positives = 46/80 (57%)
Frame = +2
Query: 2 FEQYGEIVSAKVMVDKEGNSKGFGFVSYKEHEDAMKAVNTLNGRVIEDKTIYVGRAMKKA 181
F YG I SAKVM + G SKGFGFV + E+A KA+ N +++ K +YV A +K
Sbjct: 342 FAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401
Query: 182 ERQRELRARYEKTRQERLQQ 241
R+ +L + + Q R QQ
Sbjct: 402 VRRSQLAQQIQARNQMRYQQ 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,769,659
Number of Sequences: 369166
Number of extensions: 2205981
Number of successful extensions: 8100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7799
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10191921135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)