Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F19
(886 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 160 3e-39
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 156 6e-38
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 155 1e-37
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 155 1e-37
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 154 3e-37
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 152 1e-36
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 146 7e-35
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 137 5e-32
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly... 126 7e-29
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 124 3e-28
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 633
Score = 160 bits (406), Expect = 3e-39
Identities = 122/320 (38%), Positives = 159/320 (49%), Gaps = 28/320 (8%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLY+KNL + I+DERL+ EF FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQR---VHQPQPAVXXXXXXXXXXXXXX 357
+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR V P P +
Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAA 410
Query: 358 XXXXXAR-----PGNILQ----SRWP---------QNMPYIQPRNIGMPANQNIMMAGMP 483
R PG I Q RW QNMP P + M
Sbjct: 411 IPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASN 470
Query: 484 QNQQRRNIIVDPIISQNRNARPITGNVQLNQPRPQYNIVANG---RQAGNMMYQYPIQDN 654
Q V ++S R A T Q PRP A R Y +++
Sbjct: 471 Q--------VPRVMSAQRVANTST---QTMGPRPTTAAAAAASAVRAVPQYKYAAGVRNQ 519
Query: 655 QTMMNPDQMKMPD----IESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGK 822
Q + Q+ M ++ Q L T S +A A E KQ+LGE+++PL+ +AGK
Sbjct: 520 QHLNTQPQVAMQQPAVHVQGQEPL-TASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGK 578
Query: 823 NYRECFWELDNAELLYMIEN 882
E+DN+ELL+M+E+
Sbjct: 579 -ITGMLLEIDNSELLHMLES 597
Score = 91.7 bits (226), Expect = 3e-18
Identities = 47/96 (48%), Positives = 63/96 (65%)
Frame = +1
Query: 1 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 180
K N+YIKN G+D+NDERLK F +G S KVM + +N SKGFGFV F ++A +
Sbjct: 188 KEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQK 246
Query: 181 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
AV EM GK + GK ++V AQKK +R L+ +F+Q
Sbjct: 247 AVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 70.1 bits (170), Expect = 8e-12
Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 156 bits (395), Expect = 6e-38
Identities = 117/318 (36%), Positives = 156/318 (49%), Gaps = 26/318 (8%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXX 327
+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+ +QP P
Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Query: 328 XXXXXXXXXXXXXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAG 477
++ + S RW QNMP P + A
Sbjct: 411 AAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPAS 470
Query: 478 MPQNQQRRNIIVDPIISQNRNARP---ITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQ 648
+ V +Q RP T + PQY A R N Q
Sbjct: 471 SQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVR---NPQQHLNAQ 527
Query: 649 DNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNY 828
TM P ++ Q L T S +A+A E KQ+LGE+++PL+ +AGK
Sbjct: 528 PQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGK-I 581
Query: 829 RECFWELDNAELLYMIEN 882
E+DN+ELL+M+E+
Sbjct: 582 TGMLLEIDNSELLHMLES 599
Score = 94.0 bits (232), Expect = 5e-19
Identities = 49/96 (51%), Positives = 63/96 (65%)
Frame = +1
Query: 1 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 180
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246
Query: 181 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 70.1 bits (170), Expect = 8e-12
Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 155 bits (393), Expect = 1e-37
Identities = 116/318 (36%), Positives = 155/318 (48%), Gaps = 26/318 (8%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXX 327
+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+ +QP P
Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Query: 328 XXXXXXXXXXXXXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAG 477
++ + S RW QNMP P + A
Sbjct: 411 AAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPAS 470
Query: 478 MPQNQQRRNIIVDPIISQNRNARPITGNVQLN---QPRPQYNIVANGRQAGNMMYQYPIQ 648
+ V +Q RP + PQY A R N Q
Sbjct: 471 SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVR---NPQQHLNAQ 527
Query: 649 DNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNY 828
TM P ++ Q L T S +A+A E KQ+LGE+++PL+ +AGK
Sbjct: 528 PQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGK-I 581
Query: 829 RECFWELDNAELLYMIEN 882
E+DN+ELL+M+E+
Sbjct: 582 TGMLLEIDNSELLHMLES 599
Score = 94.0 bits (232), Expect = 5e-19
Identities = 49/96 (51%), Positives = 63/96 (65%)
Frame = +1
Query: 1 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 180
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246
Query: 181 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 69.7 bits (169), Expect = 1e-11
Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 155 bits (392), Expect = 1e-37
Identities = 116/318 (36%), Positives = 155/318 (48%), Gaps = 26/318 (8%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAV 350
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV-------------HQPQPAVXXXX 327
+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QR+ +QP P
Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFM 410
Query: 328 XXXXXXXXXXXXXXXARPGNILQS-RWP---------QNMPYIQPRNIGMPANQNIMMAG 477
++ + S RW QNMP P + A
Sbjct: 411 AAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPAS 470
Query: 478 MPQNQQRRNIIVDPIISQNRNARPITGNVQLN---QPRPQYNIVANGRQAGNMMYQYPIQ 648
+ V +Q RP + PQY A R N Q
Sbjct: 471 SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVR---NPQQHLNAQ 527
Query: 649 DNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNY 828
TM P ++ Q L T S +A+A E KQ+LGE+++PL+ +AGK
Sbjct: 528 PQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGK-I 581
Query: 829 RECFWELDNAELLYMIEN 882
E+DN+ELL+M+E+
Sbjct: 582 TGMLLEIDNSELLHMLES 599
Score = 94.0 bits (232), Expect = 5e-19
Identities = 49/96 (51%), Positives = 63/96 (65%)
Frame = +1
Query: 1 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 180
K N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQK 246
Query: 181 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 70.1 bits (170), Expect = 8e-12
Identities = 37/97 (38%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAE 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
RA+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 RAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4)
(Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 154 bits (389), Expect = 3e-37
Identities = 117/326 (35%), Positives = 163/326 (50%), Gaps = 34/326 (10%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLYIKNL + I+DE+L+ EF+ FG+ITSAKVML E+ SKGFGFVCFS+P+EAT+AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 350
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRV------------HQPQPAVXXXXX 330
+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ QRV +Q QPA
Sbjct: 351 TEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAA----- 405
Query: 331 XXXXXXXXXXXXXXARPGNILQSRWPQNMPYIQPRNIGMPANQNIMMAGMPQNQQR---R 501
RP ++ Q P + + G P M + + Q+ R R
Sbjct: 406 --GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLR 463
Query: 502 NIIVDPIISQNRNARPITGNVQLNQ-----------PRPQYNI-------VANGRQAGNM 627
++ +R A G Q P N+ A R
Sbjct: 464 HLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPY 523
Query: 628 MYQYPIQDNQTMMNPDQMKMPDIESQ-IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHA 804
Y ++ + P Q P + Q + T S +A A E KQ+LGE+++PL+
Sbjct: 524 KYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMH 583
Query: 805 GDMAGKNYRECFWELDNAELLYMIEN 882
++AGK E+DN+ELL+M+E+
Sbjct: 584 SNLAGK-ITGMLLEIDNSELLHMLES 608
Score = 90.5 bits (223), Expect = 6e-18
Identities = 46/96 (47%), Positives = 63/96 (65%)
Frame = +1
Query: 1 KSGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 180
K N+YIKN G +++DE LK F+ FG S KVM + N SKGFGFV + ++A +
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANK 246
Query: 181 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
AV EMNGK + GK ++V AQKK +R A L+ +F+Q
Sbjct: 247 AVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 66.2 bits (160), Expect = 1e-10
Identities = 35/97 (36%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+ FV F + A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAAD 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
+A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 153 KAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 152 bits (384), Expect = 1e-36
Identities = 119/334 (35%), Positives = 166/334 (49%), Gaps = 41/334 (12%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNLY+KNL + I+D+RL+ F+ +GNITSAKVM ++E SKGFGFVCF+A EAT AV
Sbjct: 286 GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAV 344
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ-----------RVHQPQPAVXXXXXX 333
+E+NG++V KPLYVALAQ+KE+R AHL SQ+ + +++QP A
Sbjct: 345 TELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPT 404
Query: 334 XXXXXXXXXXXXXARPGNILQSRW-PQNMPYIQPRNI---------------GMPANQNI 465
+ N RW PQ P + + +P
Sbjct: 405 LPSNQRFFGSQVATQMRN--TPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVPTQFRS 462
Query: 466 MMAG----MPQNQQRRNIIVDPIISQNRNARPITGNVQLNQPRPQY--NIVANGRQAGNM 627
AG PQ Q +N AR ITG Q P Q +A G Q
Sbjct: 463 AAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQ-QTAAPNMQIPGAQIAGGAQQRTS 521
Query: 628 MYQY-------PI-QDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIY 783
Y+Y P+ Q +QT P Q++ + E I S +ANA E KQ+LGE++Y
Sbjct: 522 NYKYTSNMRNPPVPQLHQTQPIPQQLQGKNSEKLI----ASLLANAKPQEQKQILGERLY 577
Query: 784 PLVSKHAGDMAGKNYRECFWELDNAELLYMIENE 885
P++ ++AGK E++N+ELL+MIE++
Sbjct: 578 PMIEHMHANLAGK-ITGMLLEIENSELLHMIEDQ 610
Score = 87.0 bits (214), Expect = 6e-17
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N+Y+KN D +DE+LK F +G ITS KVM +KE+ SKGFGFV F + A AV
Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 193 MNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
+NGK + EGK LYVA AQKK +R L+ +F++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
Score = 64.3 bits (155), Expect = 4e-10
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
+SGV N++IKNL I+++ + F+ FGNI S KV +++ N SKG+GFV F + A
Sbjct: 86 RSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAAN 144
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHL 270
++ ++NG ++ GK +YV +++R L
Sbjct: 145 TSIDKVNGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 2e-05
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
+LY+ +L D+N+ L +F+ G + S +V + S G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 193 MNGKIVEGKPLYVALAQK 246
MN +V KP+ + +Q+
Sbjct: 63 MNFDLVRNKPIRIMWSQR 80
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3)
(Testis-specific poly(A)-binding protein)
Length = 631
Score = 146 bits (369), Expect = 7e-35
Identities = 111/314 (35%), Positives = 158/314 (50%), Gaps = 23/314 (7%)
Frame = +1
Query: 10 VNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVS 189
VNLY+KNL + I+DERL+ F+ FG ITSAKVM+ E SKGFGFVCFS+P+EAT+AV+
Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVT 351
Query: 190 EMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVHQ----PQPAVXXXXXXXXXXXXXX 357
EMNG+IV KPLYVALAQ+KE+R A+L +++ QR+ P
Sbjct: 352 EMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQ 411
Query: 358 XXXXXARPGNILQ----SRW----PQNMPYIQPRNIGMPANQNIMMAGM-PQNQQRRNII 510
P I + RW + P+ + P + + M P + Q
Sbjct: 412 NHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQ----- 466
Query: 511 VDPIISQNRNARPITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMK-- 684
V ++S R A T V PRP A A + +Y + NP Q +
Sbjct: 467 VPRVMSTQRVANTSTQTV---GPRPAAAAAAAATPAVRTVPRYKYAAG--VRNPQQHRNA 521
Query: 685 MPDIESQ--------IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNYRECF 840
P + Q + T S++A+A + KQ+LGE+++PL+ +AGK
Sbjct: 522 QPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGK-ITGML 580
Query: 841 WELDNAELLYMIEN 882
E+DN+ELLYM+E+
Sbjct: 581 LEIDNSELLYMLES 594
Score = 92.4 bits (228), Expect = 1e-18
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N+YIKN G D++DERLK F FG S KVM + E+ SKGFGFV F ++A +AV E
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 193 MNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
MNGK + GK +YV AQKK +R L+ F+Q
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 69.3 bits (168), Expect = 1e-11
Identities = 36/97 (37%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 KSGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEAT 177
KSGV N+++KNL IN++ L + FGNI S V+ ++ N SKG+GFV F + A
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAE 152
Query: 178 RAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
RA+ +MNG ++ G+ ++V + +++R A L ++ ++
Sbjct: 153 RAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3)
Length = 660
Score = 137 bits (344), Expect = 5e-32
Identities = 107/322 (33%), Positives = 158/322 (49%), Gaps = 30/322 (9%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
G NLY+KNL + ++DE+LK F+ +GN+TS+KVMLN + S+GFGFV +S P+EA RA+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRAL 389
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVHQPQPAVXXXXXXXXXXXXXXXXX 366
SEMNGK++ KPLY+ALAQ+KEDR AHL++ F Q + P P
Sbjct: 390 SEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ-IRAPGPMSGFHHP------------ 436
Query: 367 XXARPGNILQSRWPQNMPYIQPRNIGMPANQNI-------MMAGMPQNQQRRNIIVDPII 525
PG + PQ+M Y+ M +Q I M GM N IV +
Sbjct: 437 ----PGGPMPGP-PQHM-YVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPL 490
Query: 526 SQNRNARPITG------NVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMN---PDQ 678
+ P G NVQ + + Q + + + M Y + + M+ P
Sbjct: 491 QRQPQTGPRMGFRRGATNVQQHIQQQQ---LMHRNPSPGMRYMNGASNGRNGMDSSVPQG 547
Query: 679 MKMPDIESQIDLST--------------TSKIANADSMEAKQLLGEKIYPLVSKHAGDMA 816
+ P I ID S+ TS +A+A + ++LGE++YPLV +H
Sbjct: 548 ILPPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHV 607
Query: 817 GKNYRECFWELDNAELLYMIEN 882
K E+D AE+L+++E+
Sbjct: 608 AK-VTGMLLEMDQAEILHLMES 628
Score = 72.4 bits (176), Expect = 2e-12
Identities = 40/92 (43%), Positives = 56/92 (60%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N+Y+KNL +I ++ L+ F FG I+SA VM ++ N S+ FGFV F + A AV +
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 193 MNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
MNG + LYV AQKK +R LR +F+Q
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Score = 55.5 bits (132), Expect = 2e-07
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N++IKNL I+++ L F+ FG I S KV ++ SKG+GFV F + A A+ +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDK 195
Query: 193 MNGKIVEGKPLYVALAQKKEDR 258
+NG ++ K ++V ++++R
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQER 217
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2)
Length = 629
Score = 126 bits (317), Expect = 7e-29
Identities = 99/301 (32%), Positives = 151/301 (50%), Gaps = 11/301 (3%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
NLY+KNL I+DE+LK F+ FG +TS+KVM + N TSKG GFV F+ P+EAT A+S+
Sbjct: 319 NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQ 377
Query: 193 MNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ-RVHQPQPAVXXXXXXXXXXXXXXXXXX 369
++GK++E KPLYVA+AQ+KEDR L++QF Q R QP+V
Sbjct: 378 LSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSV----------GPRMPVYP 427
Query: 370 XARPGNILQSRWPQNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNIIVDPIISQNR---- 537
PG Q + Q P + P G Q ++ P + + + Q +
Sbjct: 428 PGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGG 487
Query: 538 NARPITGNVQLNQ---PRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQI 708
RP G +Q +Q P Q + GR M++YP Q + D+ + +
Sbjct: 488 GRRP--GGIQHSQQQNPMMQQQMHPRGR-----MFRYP----QGRGGSGDVPPYDMGNNM 536
Query: 709 DL---STTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNYRECFWELDNAELLYMIE 879
L + S ++NA + + +LGE +YPLV + + A K E+D E+L+++E
Sbjct: 537 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAK-VTGMLLEMDQTEVLHLLE 595
Query: 880 N 882
+
Sbjct: 596 S 596
Score = 81.3 bits (199), Expect = 3e-15
Identities = 43/96 (44%), Positives = 58/96 (60%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N+Y+KNL D+ LK+ F +G ITSA VM + E SKGFGFV F D+A RAV
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVES 274
Query: 193 MNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQRVHQ 300
+NG + K YV AQKK +R LR +++Q + +
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 310
Score = 61.6 bits (148), Expect = 3e-09
Identities = 29/82 (35%), Positives = 51/82 (62%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N++IKNL I+ + L F+ FGNI S KV ++ SKG+GFV ++ + A +A+ +
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEK 183
Query: 193 MNGKIVEGKPLYVALAQKKEDR 258
+NG ++ K +YV ++++R
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQER 205
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
+LY+ +L ++ D +L F G + + +V + S G+G+V F+ P +A RA+ E
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 193 MNGKIVEGKPLYVALAQK 246
+N + GKP+ V + +
Sbjct: 97 LNYIPLYGKPIRVMYSHR 114
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 124 bits (312), Expect = 3e-28
Identities = 99/300 (33%), Positives = 144/300 (48%), Gaps = 7/300 (2%)
Frame = +1
Query: 7 GVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAV 186
GVNL+IKNL ++++DERLK+EF+ FG ITSAK+M + E SKGFGFVC++ P+EA +AV
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Query: 187 SEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ----RVHQPQPAVXXXXXXXXXXXXX 354
+EMN +++ GKPLYVALAQ+KE R + L +Q Q R+ Q A
Sbjct: 422 TEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGP 481
Query: 355 XXXXXXARPGNILQSRWPQNMPYIQPRNIGMPANQNIMMAGMPQNQQRRNIIVDPIISQN 534
P I + + MP + N MP M GMP +Q
Sbjct: 482 LIYGPGGYP--IPAAVNGRGMPMVPGHNGPMP-----MYPGMP--------------TQF 520
Query: 535 RNARPITGNVQLNQPRPQYNIVANGR---QAGNMMYQYPIQDNQTMMNPDQMKMPDIESQ 705
P G +N P + A GR G++ P + +P +
Sbjct: 521 PAGGPAPGYPGMNARGP---VPAQGRPMMMPGSVPSAGPAEAE---------AVPAVPGM 568
Query: 706 IDLSTTSKIANADSMEAKQLLGEKIYPLVSKHAGDMAGKNYRECFWELDNAELLYMIENE 885
+ T + +A KQ+LGE +YP V ++GK E+ N+ELL ++E++
Sbjct: 569 PERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGK-ITGMLLEMPNSELLELLEDD 627
Score = 74.3 bits (181), Expect = 4e-13
Identities = 38/92 (41%), Positives = 57/92 (61%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N+YIKNL +I ++ F FG ITS ++ +N+ +GFGFV ++ + A +AV E
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLS-LVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 193 MNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 288
+N K +GK LYV AQKK +R LR +++Q
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 58.2 bits (139), Expect = 3e-08
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Frame = +1
Query: 13 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 192
N++IKNL I+++ L F+ FG I S KV +++ N +KG+GFV F + + A A+
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEH 227
Query: 193 MNGKIVEGKPLYV---ALAQKKEDRVAHLRSQF 282
+NG ++ K +YV ++++ +V L++ F
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Score = 38.9 bits (89), Expect = 0.019
Identities = 18/81 (22%), Positives = 40/81 (49%)
Frame = +1
Query: 4 SGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRA 183
+ +LY+ L + + L F G + S +V + S G+ +V F ++ +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 184 VSEMNGKIVEGKPLYVALAQK 246
+ E+N +++G+P + +Q+
Sbjct: 138 LDELNYTLIKGRPCRIMWSQR 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,753,619
Number of Sequences: 369166
Number of extensions: 2173063
Number of successful extensions: 6830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6756
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)