Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N01
(504 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly... 155 5e-38
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 151 7e-37
sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly... 151 7e-37
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 151 7e-37
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 151 7e-37
sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly... 141 1e-33
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 140 1e-33
sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 137 1e-32
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly... 135 6e-32
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 130 1e-30
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
4) (Inducible poly(A)-binding protein) (iPABP)
(Activated-platelet protein 1) (APP-1)
Length = 644
Score = 155 bits (392), Expect = 5e-38
Identities = 78/122 (63%), Positives = 102/122 (83%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ ++E+ +QER+ ++ GVNLYIKNL + I+DE+L+ EF+ FG+ITSAKVM
Sbjct: 268 KKVERQAELKRKFEQLKQERISRY-QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
L E+ SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ Q
Sbjct: 327 L--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 384
Query: 144 RV 139
RV
Sbjct: 385 RV 386
Score = 90.1 bits (222), Expect = 3e-18
Identities = 50/119 (42%), Positives = 72/119 (60%)
Frame = -1
Query: 501 KAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVML 322
+ ER+ EL A+ ++ N+YIKN G +++DE LK F+ FG S KVM
Sbjct: 176 RKEREAELGAKAKEF-----------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMR 224
Query: 321 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ N SKGFGFV + ++A +AV EMNGK + GK ++V AQKK +R A L+ +F+Q
Sbjct: 225 DP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 64.3 bits (155), Expect = 2e-10
Identities = 34/96 (35%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+ FV F + A +
Sbjct: 96 SGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADK 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 151 bits (382), Expect = 7e-37
Identities = 75/122 (61%), Positives = 100/122 (81%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ ++E+ +Q+R+ ++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ Q
Sbjct: 327 M--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Query: 144 RV 139
R+
Sbjct: 385 RM 386
Score = 94.4 bits (233), Expect = 1e-19
Identities = 54/117 (46%), Positives = 71/117 (60%)
Frame = -1
Query: 495 ERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNK 316
ER+ EL AR ++ N+YIKN G D++DERLK F FG S KVM +
Sbjct: 178 EREAELGARAKEF-----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD- 225
Query: 315 ENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 67.8 bits (164), Expect = 1e-11
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKE 189
>sp|P20965|PABP1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 633
Score = 151 bits (382), Expect = 7e-37
Identities = 78/132 (59%), Positives = 101/132 (76%), Gaps = 3/132 (2%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ ++E+ Q+R+ ++ GVNLY+KNL + I+DERL+ EF FG ITSAKVM
Sbjct: 268 KKVERQTELKRKFEQMNQDRITRY-QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ Q
Sbjct: 327 M--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Query: 144 R---VHQPQPAV 118
R V P P +
Sbjct: 385 RMASVRVPNPVI 396
Score = 92.4 bits (228), Expect = 5e-19
Identities = 52/119 (43%), Positives = 72/119 (60%)
Frame = -1
Query: 501 KAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVML 322
+ ER+ EL AR ++ N+YIKN G+D+NDERLK F +G S KVM
Sbjct: 176 RKEREAELGARAKEF-----------TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMT 224
Query: 321 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ +N SKGFGFV F ++A +AV EM GK + GK ++V AQKK +R L+ +F+Q
Sbjct: 225 D-DNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 154 AIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 151 bits (382), Expect = 7e-37
Identities = 75/122 (61%), Positives = 100/122 (81%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ ++E+ +Q+R+ ++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ Q
Sbjct: 327 M--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Query: 144 RV 139
R+
Sbjct: 385 RM 386
Score = 94.7 bits (234), Expect = 1e-19
Identities = 54/119 (45%), Positives = 72/119 (60%)
Frame = -1
Query: 501 KAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVML 322
+ ER+ EL AR ++ N+YIKN G D++DERLK F FG S KVM
Sbjct: 176 RKEREAELGARAKEF-----------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 321 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 225 D-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 151 bits (382), Expect = 7e-37
Identities = 75/122 (61%), Positives = 100/122 (81%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ ++E+ +Q+R+ ++ GVNLY+KNL + I+DERL+ EF+ FG ITSAKVM
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRY-QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R AHL +Q+ Q
Sbjct: 327 M--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 384
Query: 144 RV 139
R+
Sbjct: 385 RM 386
Score = 94.7 bits (234), Expect = 1e-19
Identities = 54/119 (45%), Positives = 72/119 (60%)
Frame = -1
Query: 501 KAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVML 322
+ ER+ EL AR ++ N+YIKN G D++DERLK F FG S KVM
Sbjct: 176 RKEREAELGARAKEF-----------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMT 224
Query: 321 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ +F+Q
Sbjct: 225 D-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 68.2 bits (165), Expect = 1e-11
Identities = 36/96 (37%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ L F+ FGNI S KV+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAER 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ + ++V + +++R A L ++ ++
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3) (Testis-specific poly(A)-binding protein)
Length = 631
Score = 141 bits (355), Expect = 1e-33
Identities = 71/122 (58%), Positives = 97/122 (79%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ERQ EL+ +E+ +Q+R+ ++ VNLY+KNL + I+DERL+ F+ FG ITSAKVM
Sbjct: 268 KKVERQTELKRTFEQMKQDRITRY-QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM 326
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVCFS+P+EAT+AV+EMNG+IV KPLYVALAQ+KE+R A+L +++ Q
Sbjct: 327 M--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQ 384
Query: 144 RV 139
R+
Sbjct: 385 RM 386
Score = 93.2 bits (230), Expect = 3e-19
Identities = 54/119 (45%), Positives = 71/119 (59%)
Frame = -1
Query: 501 KAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVML 322
+ ER+ EL AR ++ N+YIKN G D++DERLK F FG S KVM
Sbjct: 176 RKEREAELGARAKEFP-----------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMT 224
Query: 321 NKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E+ SKGFGFV F ++A +AV EMNGK + GK +YV AQKK +R L+ F+Q
Sbjct: 225 D-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 67.4 bits (163), Expect = 2e-11
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N+++KNL IN++ L + FGNI S V+ ++ N SKG+GFV F + A R
Sbjct: 96 SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAER 153
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
A+ +MNG ++ G+ ++V + +++R A L ++ ++
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKE 189
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 140 bits (354), Expect = 1e-33
Identities = 70/122 (57%), Positives = 98/122 (80%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KKAERQ+EL+ ++E+ +Q+R + + GVNLY+KNL + I+D+RL+ F+ +GNITSAKVM
Sbjct: 261 KKAERQQELKRKFEELKQKR-HESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVM 319
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
++E SKGFGFVCF+A EAT AV+E+NG++V KPLYVALAQ+KE+R AHL SQ+ +
Sbjct: 320 TDEEGR-SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMR 378
Query: 144 RV 139
+
Sbjct: 379 HM 380
Score = 87.0 bits (214), Expect = 2e-17
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Frame = -1
Query: 420 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 241
N+Y+KN D +DE+LK F +G ITS KVM +KE+ SKGFGFV F + A AV
Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 240 MNGK-IVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+NGK + EGK LYVA AQKK +R L+ +F++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEE 275
Score = 63.5 bits (153), Expect = 3e-10
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = -1
Query: 429 SGV-NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATR 253
SGV N++IKNL I+++ + F+ FGNI S KV +++ N SKG+GFV F + A
Sbjct: 87 SGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANT 145
Query: 252 AVSEMNGKIVEGKPLYVALAQKKEDRVAHL 163
++ ++NG ++ GK +YV +++R L
Sbjct: 146 SIDKVNGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 7e-06
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = -1
Query: 420 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 241
+LY+ +L D+N+ L +F+ G + S +V + S G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 240 MNGKIVEGKPLYVALAQK 187
MN +V KP+ + +Q+
Sbjct: 63 MNFDLVRNKPIRIMWSQR 80
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 653
Score = 137 bits (345), Expect = 1e-32
Identities = 68/121 (56%), Positives = 95/121 (78%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK ER+ ELR RYE+ + E++ ++ GVNL+IKNL ++++DERLK+EF+ FG ITSAK+M
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKY-QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIM 396
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ E SKGFGFVC++ P+EA +AV+EMN +++ GKPLYVALAQ+KE R + L +Q Q
Sbjct: 397 TD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQA 455
Query: 144 R 142
R
Sbjct: 456 R 456
Score = 75.9 bits (185), Expect = 5e-14
Identities = 43/120 (35%), Positives = 69/120 (57%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK + R +++ E L+ + + N+YIKNL +I ++ F FG ITS +
Sbjct: 236 KKVYVGHHVSRRERQSKVEALKANFT--NVYIKNLDTEITEQEFSDLFGQFGEITSLS-L 292
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+ +N+ +GFGFV ++ + A +AV E+N K +GK LYV AQKK +R LR +++Q
Sbjct: 293 VKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Frame = -1
Query: 420 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 241
N++IKNL I+++ L F+ FG I S KV +++ N +KG+GFV F + + A A+
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEH 227
Query: 240 MNGKIVEGKPLYV---ALAQKKEDRVAHLRSQF 151
+NG ++ K +YV ++++ +V L++ F
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Score = 38.9 bits (89), Expect = 0.007
Identities = 18/81 (22%), Positives = 40/81 (49%)
Frame = -1
Query: 429 SGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRA 250
+ +LY+ L + + L F G + S +V + S G+ +V F ++ +A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 249 VSEMNGKIVEGKPLYVALAQK 187
+ E+N +++G+P + +Q+
Sbjct: 138 LDELNYTLIKGRPCRIMWSQR 158
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP
3)
Length = 660
Score = 135 bits (340), Expect = 6e-32
Identities = 68/127 (53%), Positives = 96/127 (75%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK+ER+ ELR ++E+ R R ++ G NLY+KNL + ++DE+LK F+ +GN+TS+KVM
Sbjct: 306 KKSEREEELRRKFEQERINRFEKS-QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM 364
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
LN + S+GFGFV +S P+EA RA+SEMNGK++ KPLY+ALAQ+KEDR AHL++ F Q
Sbjct: 365 LNPQG-MSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ 423
Query: 144 RVHQPQP 124
+ P P
Sbjct: 424 -IRAPGP 429
Score = 76.3 bits (186), Expect = 4e-14
Identities = 47/115 (40%), Positives = 65/115 (56%)
Frame = -1
Query: 489 QRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKEN 310
+R+ RAR E T R N+Y+KNL +I ++ L+ F FG I+SA VM ++
Sbjct: 213 RRQERARDENTPTPRF------TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG 266
Query: 309 NTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
N S+ FGFV F + A AV +MNG + LYV AQKK +R LR +F+Q
Sbjct: 267 N-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ 320
Score = 55.5 bits (132), Expect = 7e-08
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = -1
Query: 420 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 241
N++IKNL I+++ L F+ FG I S KV ++ SKG+GFV F + A A+ +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDK 195
Query: 240 MNGKIVEGKPLYVALAQKKEDR 175
+NG ++ K ++V ++++R
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQER 217
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
5)
Length = 668
Score = 130 bits (328), Expect = 1e-30
Identities = 64/120 (53%), Positives = 91/120 (75%)
Frame = -1
Query: 504 KKAERQRELRARYEKTRQERLQQHISGVNLYIKNLGNDINDERLKSEFAIFGNITSAKVM 325
KK++R+ ELR ++E+ R R ++ + G NLY+KNL + +NDE+LK F+ +GN+TS KVM
Sbjct: 302 KKSDREEELRRKFEQERISRFEK-LQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM 360
Query: 324 LNKENNTSKGFGFVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
+N + S+GFGFV +S P+EA A+ EMNGK++ KPLYVALAQ+KE+R AHL+S F Q
Sbjct: 361 MNSQG-LSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQ 419
Score = 81.3 bits (199), Expect = 1e-15
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Frame = -1
Query: 456 RQERLQQHISGV----NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFG 289
RQ+R + V N+Y+KNL +I D+ LK F +G+I+SA VM ++ N S+ FG
Sbjct: 210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFG 268
Query: 288 FVCFSAPDEATRAVSEMNGKIVEGKPLYVALAQKKEDRVAHLRSQFQQ 145
FV F +P+ A AV +MNG + LYV AQKK DR LR +F+Q
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQ 316
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/82 (35%), Positives = 49/82 (59%)
Frame = -1
Query: 420 NLYIKNLGNDINDERLKSEFAIFGNITSAKVMLNKENNTSKGFGFVCFSAPDEATRAVSE 241
N++IKNL I+++ L F+ FG I S KV ++ SKG+GFV F + A A+ +
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGR-SKGYGFVQFEKEETAQAAIDK 191
Query: 240 MNGKIVEGKPLYVALAQKKEDR 175
+NG ++ K ++V +++DR
Sbjct: 192 LNGMLLNDKQVFVGHFVRRQDR 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,178,565
Number of Sequences: 369166
Number of extensions: 1137390
Number of successful extensions: 4162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4086
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)