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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00878
         (808 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60830|TI17B_HUMAN  Mitochondrial import inner membrane t...   130   3e-30
sp|Q99595|TI17A_HUMAN  Mitochondrial import inner membrane t...   129   7e-30
sp|Q9Z0V8|TI17A_MOUSE  Mitochondrial import inner membrane t...   128   2e-29
sp|Q9VNA0|TI17A_DROME  Probable mitochondrial import inner m...   128   2e-29
sp|Q9Z0V7|TI17B_MOUSE  Mitochondrial import inner membrane t...   127   4e-29
sp|O35092|TI17A_RAT  Mitochondrial import inner membrane tra...   127   4e-29
sp|Q9VGA2|TI17C_DROME  Probable mitochondrial import inner m...   122   1e-27
sp|P39515|TIM17_YEAST  Mitochondrial import inner membrane t...   118   2e-26
sp|P59670|TIM17_NEUCR  Mitochondrial import inner membrane t...   118   2e-26
sp|O44477|TIM17_CAEEL  Probable mitochondrial import inner m...   117   5e-26

>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
           (JM3)
          Length = 172

 Score =  130 bits (328), Expect = 3e-30
 Identities = 64/139 (46%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCPWRI  D             +F  + GF++AP G+  RL  +A   +IR+P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP 60

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
            +GGSFA+WGG FS +DC L+  R KEDP NSI +G +TG VLA R G   + G A +G 
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG 120

Query: 377 VLLGIIEGCGILFQRFSTQ 433
           +LL +IEG GIL  R++ Q
Sbjct: 121 ILLALIEGVGILLTRYTAQ 139

>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
           (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  129 bits (325), Expect = 7e-30
 Identities = 62/138 (44%), Positives = 87/138 (63%), Gaps = 1/138 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCPWRI  D             +F  + GF+++P G++ RL  + T  K R+P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
            LGGSFA+WGG FS +DC+++  R KEDP NSI +G +TG +LA R G   + G A +G 
Sbjct: 61  QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 377 VLLGIIEGCGILFQRFST 430
           +LL +IEG GIL  RF++
Sbjct: 121 ILLALIEGAGILLTRFAS 138

>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
           (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  128 bits (321), Expect = 2e-29
 Identities = 62/138 (44%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCPWRI  D             +F    GF+++P G++ RL  + T  K R+P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAP 60

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
            LGGSFA+WGG FS +DC+++  R KEDP NSI +G +TG +LA R G   + G A +G 
Sbjct: 61  QLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 377 VLLGIIEGCGILFQRFST 430
           +LL +IEG GIL  RF++
Sbjct: 121 ILLALIEGAGILLTRFAS 138

>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
           Tim17 1
          Length = 179

 Score =  128 bits (321), Expect = 2e-29
 Identities = 63/156 (40%), Positives = 89/156 (57%)
 Frame = +2

Query: 32  RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGS 211
           R+PCP+RI  D              F  + GF++APSGL  RL       + RS ++GG+
Sbjct: 6   REPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGN 65

Query: 212 FAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGI 391
           FA+WG TFS +DC+L+Y RKKEDP N+I++G  TGG+LA R G + +   A VG  LL +
Sbjct: 66  FAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLAL 125

Query: 392 IEGCGILFQRFSTQAIVEESMPDNNQTISHQSLGLQ 499
           IEG GI+   +S  +  + S  +  Q    + L  Q
Sbjct: 126 IEGVGIVVSHYSADSYRQVSPVERQQRYKQELLRQQ 161

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
          Length = 172

 Score =  127 bits (319), Expect = 4e-29
 Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCPWRI  D             +F  + GF++AP G+  R   +    +IR+P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAP 60

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
            +GGSFA+WGG FS +DC L+  R KEDP NSI +G +TG VLA R G   + G A +G 
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGG 120

Query: 377 VLLGIIEGCGILFQRFSTQ 433
           +LL +IEG GIL  R++ Q
Sbjct: 121 ILLALIEGVGILLTRYTAQ 139

>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
           (Inner membrane preprotein translocase Tim17a)
          Length = 171

 Score =  127 bits (319), Expect = 4e-29
 Identities = 62/138 (44%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCPWRI  D             +F    GF+++P G++ RL  + T  K R+P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
            LGGSFA+WGG FS +DC ++  R KEDP NSI +G +TG +LA R G   + G A +G 
Sbjct: 61  QLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 377 VLLGIIEGCGILFQRFST 430
           +LL +IEG GIL  RF++
Sbjct: 121 ILLALIEGAGILLTRFAS 138

>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
           Tim17 3
          Length = 222

 Score =  122 bits (306), Expect = 1e-27
 Identities = 60/129 (46%), Positives = 80/129 (62%)
 Frame = +2

Query: 20  MDAYRDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPV 199
           M+  R PCP RI  D             LF F+ GF++AP+GL +RL       K+R+P 
Sbjct: 1   MEYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPS 60

Query: 200 LGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAV 379
           + GSFA+WG TFS VDCAL++ R++ED  NSIL+G  TGG+LA R G   +A  A VG +
Sbjct: 61  IAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCL 120

Query: 380 LLGIIEGCG 406
           +L +IEG G
Sbjct: 121 VLAMIEGAG 129

>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
           (Mitochondrial protein import protein 2) (Mitochondrial
           inner membrane protein MIM17)
          Length = 158

 Score =  118 bits (296), Expect = 2e-26
 Identities = 59/135 (43%), Positives = 83/135 (61%)
 Frame = +2

Query: 23  DAYRDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVL 202
           D  RDPCP  I +D             +++ + GF+++P G  +R   A +  K R+PVL
Sbjct: 4   DHSRDPCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLG--ERGSGAMSAIKARAPVL 61

Query: 203 GGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVL 382
           GG+F +WGG FS  DCA+   RK+EDP N+I+AG  TGG LA+RGGW      +   A L
Sbjct: 62  GGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITCACL 121

Query: 383 LGIIEGCGILFQRFS 427
           LG+IEG G++FQR++
Sbjct: 122 LGVIEGVGLMFQRYA 136

>sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane translocase subunit tim-17
          Length = 155

 Score =  118 bits (295), Expect = 2e-26
 Identities = 68/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
 Frame = +2

Query: 20  MDAYRDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPV 199
           MD  RDPCPW I +D             +++ + GF+++P G  +R I A T  K+R+P 
Sbjct: 1   MDHTRDPCPWVILNDFGGAFAMGAIGGTIWHGIKGFRNSPYG--ERRIGAITAIKMRAPA 58

Query: 200 LGGSFAMWGGTFSCVDCALIYGRK-KEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
           LGG+F +WGG FS  DCA+   R  KEDP NSILAG  TGG LA+RGG+      A   A
Sbjct: 59  LGGNFGVWGGLFSTFDCAIKGLRNHKEDPWNSILAGFFTGGALAVRGGYKAARNGAIGCA 118

Query: 377 VLLGIIEGCGILFQRFSTQAIVEE--SMPDNNQTI 475
           VLL +IEG GI FQ+    A   E  + P +N+ +
Sbjct: 119 VLLAVIEGVGIGFQKMLAGATKLEAPAPPPSNEKV 153

>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
           Tim17
          Length = 181

 Score =  117 bits (292), Expect = 5e-26
 Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 1/159 (0%)
 Frame = +2

Query: 20  MDAY-RDPCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSP 196
           M+ Y R+PCP+RI  D             +F    G+K+A  G  K+L+      ++RS 
Sbjct: 1   MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRST 58

Query: 197 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 376
           + G  FA WGG FS +DC L+  RKKEDPINSI++GG+TG +LAIR G   +AG A +G+
Sbjct: 59  LTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGS 118

Query: 377 VLLGIIEGCGILFQRFSTQAIVEESMPDNNQTISHQSLG 493
           V+L +IEG G++  R+   A+++ + P        +SLG
Sbjct: 119 VILAMIEGVGLVTTRW-MGAMMDPTQPPPEALDDPRSLG 156

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,799,326
Number of Sequences: 369166
Number of extensions: 1791429
Number of successful extensions: 4850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4811
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_023_N22
2. Dr_sW_022_C01
3. Dr_sW_008_F05
4. Dr_sW_010_I18
5. Dr_sW_012_B14
6. Dr_sW_008_I11
7. Dr_sW_024_B15
8. Dr_sW_018_H24
9. Dr_sW_013_G02
10. Dr_sW_003_H14
11. Dr_sW_013_G10