Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_B14
(225 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 40 0.002
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 34 0.12
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 34 0.12
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 33 0.20
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 33 0.20
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 33 0.20
sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane t... 32 0.58
sp|O33369|YOR2_NEIGO Hypothetical protein (ORF2) 32 0.58
sp|P14679|TYRO_HUMAN Tyrosinase precursor (Monophenol monoo... 30 1.3
sp|Q9BDE0|TYRO_GORGO Tyrosinase precursor (Monophenol monoo... 30 1.3
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 39.7 bits (91), Expect = 0.002
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1
Query: 1 IRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFS 99
+RGGW + A LLG+IEG G++FQR++
Sbjct: 104 VRGGWRHTRNSSITCACLLGVIEGVGLMFQRYA 136
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 4 RGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 105
R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 106 RSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 4 RGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 105
R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 106 RSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 4 RGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 102
R G + G A +G +LL +IEG GIL RF++
Sbjct: 106 RNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 4 RGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 102
R G + G A +G +LL +IEG GIL RF++
Sbjct: 106 RNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 4 RGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 102
R G + G A +G +LL +IEG GIL RF++
Sbjct: 106 RNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane translocase subunit tim-17
Length = 155
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 1 IRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEE--SMPDNNQTI 147
+RGG+ A AVLL +IEG GI FQ+ A E + P +N+ +
Sbjct: 103 VRGGYKAARNGAIGCAVLLAVIEGVGIGFQKMLAGATKLEAPAPPPSNEKV 153
>sp|O33369|YOR2_NEIGO Hypothetical protein (ORF2)
Length = 417
Score = 31.6 bits (70), Expect = 0.58
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 134 LSGIDSSTIACVLNL*NKIPQPSIIPSNTAPT--NACPATWD 15
+S + + C N +P S +P NT PT N CP TWD
Sbjct: 310 ISALGHTAAKCTKNAAPTLPHSSTLPPNTPPTSSNTCP-TWD 350
>sp|P14679|TYRO_HUMAN Tyrosinase precursor (Monophenol monooxygenase) (Tumor rejection
antigen AB) (SK29-AB) (LB24-AB)
Length = 529
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 13 WSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMP 129
WS + G A VGAVL ++ G L R + + EE P
Sbjct: 475 WSWLLGAAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQP 513
>sp|Q9BDE0|TYRO_GORGO Tyrosinase precursor (Monophenol monooxygenase)
Length = 529
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 13 WSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMP 129
WS + G A VGAVL ++ G L R + + EE P
Sbjct: 475 WSWLLGAAMVGAVLTALLAGLVSLLCRHKRKQLPEEKQP 513
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,308,194
Number of Sequences: 369166
Number of extensions: 409628
Number of successful extensions: 1075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)