Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H24
(518 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 127 1e-29
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 126 3e-29
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 125 6e-29
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 125 8e-29
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 124 1e-28
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 124 1e-28
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 119 4e-27
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 114 2e-25
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 113 2e-25
sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner m... 111 1e-24
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 127 bits (320), Expect = 1e-29
Identities = 61/132 (46%), Positives = 81/132 (61%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCPWRI D +F + GF++AP G+ RL +A +IR+P +GGSFA
Sbjct: 8 PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G +LL +IE
Sbjct: 68 VWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIE 127
Query: 363 GCGILFQRFSTQ 398
G GIL R++ Q
Sbjct: 128 GVGILLTRYTAQ 139
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 126 bits (317), Expect = 3e-29
Identities = 59/131 (45%), Positives = 82/131 (62%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCPWRI D +F + GF+++P G++ RL + T K R+P LGGSFA
Sbjct: 8 PCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G +LL +IE
Sbjct: 68 VWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIE 127
Query: 363 GCGILFQRFST 395
G GIL RF++
Sbjct: 128 GAGILLTRFAS 138
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 125 bits (314), Expect = 6e-29
Identities = 62/154 (40%), Positives = 87/154 (56%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCP+RI D F + GF++APSGL RL + RS ++GG+FA
Sbjct: 8 PCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WG TFS +DC+L+Y RKKEDP N+I++G TGG+LA R G + + A VG LL +IE
Sbjct: 68 VWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLALIE 127
Query: 363 GCGILFQRFSTQAIVEESMPDNNQTISHQSLGLQ 464
G GI+ +S + + S + Q + L Q
Sbjct: 128 GVGIVVSHYSADSYRQVSPVERQQRYKQELLRQQ 161
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 125 bits (313), Expect = 8e-29
Identities = 59/131 (45%), Positives = 81/131 (61%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCPWRI D +F GF+++P G++ RL + T K R+P LGGSFA
Sbjct: 8 PCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G +LL +IE
Sbjct: 68 VWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIE 127
Query: 363 GCGILFQRFST 395
G GIL RF++
Sbjct: 128 GAGILLTRFAS 138
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 124 bits (311), Expect = 1e-28
Identities = 59/132 (44%), Positives = 79/132 (59%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCPWRI D +F + GF++AP G+ R + +IR+P +GGSFA
Sbjct: 8 PCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G +LL +IE
Sbjct: 68 VWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIE 127
Query: 363 GCGILFQRFSTQ 398
G GIL R++ Q
Sbjct: 128 GVGILLTRYTAQ 139
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 124 bits (311), Expect = 1e-28
Identities = 59/131 (45%), Positives = 80/131 (61%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCPWRI D +F GF+++P G++ RL + T K R+P LGGSFA
Sbjct: 8 PCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFA 67
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS +DC ++ R KEDP NSI +G +TG +LA R G + G A +G +LL +IE
Sbjct: 68 VWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIE 127
Query: 363 GCGILFQRFST 395
G GIL RF++
Sbjct: 128 GAGILLTRFAS 138
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 119 bits (298), Expect = 4e-27
Identities = 58/123 (47%), Positives = 77/123 (62%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCP RI D LF F+ GF++AP+GL +RL K+R+P + GSFA
Sbjct: 7 PCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFA 66
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WG TFS VDCAL++ R++ED NSIL+G TGG+LA R G +A A VG ++L +IE
Sbjct: 67 VWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIE 126
Query: 363 GCG 371
G G
Sbjct: 127 GAG 129
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 114 bits (284), Expect = 2e-25
Identities = 61/152 (40%), Positives = 89/152 (58%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCP+RI D +F G+K+A G K+L+ ++RS + G FA
Sbjct: 8 PCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRSTLTGVQFA 65
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
WGG FS +DC L+ RKKEDPINSI++GG+TG +LAIR G +AG A +G+V+L +IE
Sbjct: 66 AWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIE 125
Query: 363 GCGILFQRFSTQAIVEESMPDNNQTISHQSLG 458
G G++ R+ A+++ + P +SLG
Sbjct: 126 GVGLVTTRW-MGAMMDPTQPPPEALDDPRSLG 156
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 113 bits (283), Expect = 2e-25
Identities = 56/130 (43%), Positives = 80/130 (61%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCP I +D +++ + GF+++P G +R A + K R+PVLGG+F
Sbjct: 9 PCPIVILNDFGGAFAMGAIGGVVWHGIKGFRNSPLG--ERGSGAMSAIKARAPVLGGNFG 66
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WGG FS DCA+ RK+EDP N+I+AG TGG LA+RGGW + A LLG+IE
Sbjct: 67 VWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITCACLLGVIE 126
Query: 363 GCGILFQRFS 392
G G++FQR++
Sbjct: 127 GVGLMFQRYA 136
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4
Length = 224
Score = 111 bits (277), Expect = 1e-24
Identities = 52/123 (42%), Positives = 75/123 (60%)
Frame = +3
Query: 3 PCPWRIFSDXXXXXXXXXXXXXLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFA 182
PCP RI D LF ++ GF++APSGL + L ++R+P + GSFA
Sbjct: 7 PCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFA 66
Query: 183 MWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIE 362
+WG TFS VDC ++ R++ED N+I++G TGG+LA R G +A AFVG ++L ++E
Sbjct: 67 IWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILAARNGIRAMANSAFVGCLVLAMLE 126
Query: 363 GCG 371
G G
Sbjct: 127 GAG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,424,062
Number of Sequences: 369166
Number of extensions: 1237868
Number of successful extensions: 3913
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3874
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)