Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I11
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 116 3e-26
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 114 1e-25
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 113 3e-25
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 111 8e-25
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 111 1e-24
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 110 1e-24
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 110 1e-24
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 107 1e-23
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 104 1e-22
sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner m... 103 3e-22
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 116 bits (290), Expect = 3e-26
Identities = 56/131 (42%), Positives = 80/131 (61%)
Frame = +3
Query: 54 FNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPI 233
F + GF++APSGL RL + RS ++GG+FA+WG TFS +DC+L+Y RKKEDP
Sbjct: 31 FQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPW 90
Query: 234 NSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMPDNN 413
N+I++G TGG+LA R G + + A VG LL +IEG GI+ +S + + S +
Sbjct: 91 NAIISGATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQ 150
Query: 414 QTISHQSLGLQ 446
Q + L Q
Sbjct: 151 QRYKQELLRQQ 161
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 114 bits (285), Expect = 1e-25
Identities = 54/110 (49%), Positives = 74/110 (67%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F + GF++AP G+ RL +A +IR+P +GGSFA+WGG FS +DC L+ R KEDP
Sbjct: 30 VFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDP 89
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 380
NSI +G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 90 WNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 113 bits (282), Expect = 3e-25
Identities = 52/109 (47%), Positives = 75/109 (68%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F + GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++ R KEDP
Sbjct: 30 IFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDP 89
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 377
NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 90 WNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 111 bits (278), Expect = 8e-25
Identities = 52/109 (47%), Positives = 74/109 (67%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++ R KEDP
Sbjct: 30 IFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDP 89
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 377
NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 90 WNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 111 bits (277), Expect = 1e-24
Identities = 52/101 (51%), Positives = 71/101 (70%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
LF F+ GF++AP+GL +RL K+R+P + GSFA+WG TFS VDCAL++ R++ED
Sbjct: 29 LFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDA 88
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCG 353
NSIL+G TGG+LA R G +A A VG ++L +IEG G
Sbjct: 89 WNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIEGAG 129
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 110 bits (276), Expect = 1e-24
Identities = 52/110 (47%), Positives = 72/110 (65%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F + GF++AP G+ R + +IR+P +GGSFA+WGG FS +DC L+ R KEDP
Sbjct: 30 VFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDP 89
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 380
NSI +G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 90 WNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 110 bits (276), Expect = 1e-24
Identities = 52/109 (47%), Positives = 73/109 (66%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC ++ R KEDP
Sbjct: 30 IFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDP 89
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 377
NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 90 WNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 107 bits (268), Expect = 1e-23
Identities = 51/104 (49%), Positives = 71/104 (68%)
Frame = +3
Query: 63 VAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSI 242
+ GF+++P G +R A + K R+PVLGG+F +WGG FS DCA+ RK+EDP N+I
Sbjct: 35 IKGFRNSPLG--ERGSGAMSAIKARAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAI 92
Query: 243 LAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFS 374
+AG TGG LA+RGGW + A LLG+IEG G++FQR++
Sbjct: 93 IAGFFTGGALAVRGGWRHTRNSSITCACLLGVIEGVGLMFQRYA 136
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 104 bits (260), Expect = 1e-22
Identities = 55/130 (42%), Positives = 82/130 (63%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
+F G+K+A G K+L+ ++RS + G FA WGG FS +DC L+ RKKEDP
Sbjct: 30 IFQAFGGYKNAAKG--KKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCLVAIRKKEDP 87
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMPDN 410
INSI++GG+TG +LAIR G +AG A +G+V+L +IEG G++ R+ A+++ + P
Sbjct: 88 INSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIEGVGLVTTRW-MGAMMDPTQPPP 146
Query: 411 NQTISHQSLG 440
+SLG
Sbjct: 147 EALDDPRSLG 156
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4
Length = 224
Score = 103 bits (256), Expect = 3e-22
Identities = 46/101 (45%), Positives = 69/101 (68%)
Frame = +3
Query: 51 LFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDP 230
LF ++ GF++APSGL + L ++R+P + GSFA+WG TFS VDC ++ R++ED
Sbjct: 29 LFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSYRQREDS 88
Query: 231 INSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCG 353
N+I++G TGG+LA R G +A AFVG ++L ++EG G
Sbjct: 89 WNAIVSGAATGGILAARNGIRAMANSAFVGCLVLAMLEGAG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,008,838
Number of Sequences: 369166
Number of extensions: 1199005
Number of successful extensions: 3869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3835
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)