Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H14
(345 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 89 2e-18
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 89 2e-18
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 87 2e-17
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 85 6e-17
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 84 8e-17
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 84 1e-16
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 84 1e-16
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 83 2e-16
sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane t... 81 7e-16
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 79 2e-15
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 89.4 bits (220), Expect = 2e-18
Identities = 45/94 (47%), Positives = 64/94 (68%)
Frame = +1
Query: 4 FAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGI 183
FA WGG FS +DC L+ RKKEDPINSI++GG+TG +LAIR G +AG A +G+V+L +
Sbjct: 64 FAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAM 123
Query: 184 IEGCGILFQRFSTQAIVEESMPDNNQTISHQSLG 285
IEG G++ R+ A+++ + P +SLG
Sbjct: 124 IEGVGLVTTRW-MGAMMDPTQPPPEALDDPRSLG 156
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 89.4 bits (220), Expect = 2e-18
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
+FA+WG TFS +DC+L+Y RKKEDP N+I++G TGG+LA R G + + A VG LL
Sbjct: 65 NFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLA 124
Query: 181 IIEGCGILFQRFSTQAIVEESMPDNNQTISHQSLGLQ 291
+IEG GI+ +S + + S + Q + L Q
Sbjct: 125 LIEGVGIVVSHYSADSYRQVSPVERQQRYKQELLRQQ 161
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 86.7 bits (213), Expect = 2e-17
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
+F +WGG FS DCA+ RK+EDP N+I+AG TGG LA+RGGW + A LLG
Sbjct: 64 NFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITCACLLG 123
Query: 181 IIEGCGILFQRFS 219
+IEG G++FQR++
Sbjct: 124 VIEGVGLMFQRYA 136
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G +LL
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLA 124
Query: 181 IIEGCGILFQRFSTQ 225
+IEG GIL R++ Q
Sbjct: 125 LIEGVGILLTRYTAQ 139
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 84.3 bits (207), Expect = 8e-17
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G +LL
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLA 124
Query: 181 IIEGCGILFQRFSTQ 225
+IEG GIL R++ Q
Sbjct: 125 LIEGVGILLTRYTAQ 139
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 84.0 bits (206), Expect = 1e-16
Identities = 38/74 (51%), Positives = 52/74 (70%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G +LL
Sbjct: 65 SFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLA 124
Query: 181 IIEGCGILFQRFST 222
+IEG GIL RF++
Sbjct: 125 LIEGAGILLTRFAS 138
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 83.6 bits (205), Expect = 1e-16
Identities = 38/74 (51%), Positives = 52/74 (70%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G +LL
Sbjct: 65 SFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLA 124
Query: 181 IIEGCGILFQRFST 222
+IEG GIL RF++
Sbjct: 125 LIEGAGILLTRFAS 138
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 83.2 bits (204), Expect = 2e-16
Identities = 38/74 (51%), Positives = 51/74 (68%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS +DC ++ R KEDP NSI +G +TG +LA R G + G A +G +LL
Sbjct: 65 SFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLA 124
Query: 181 IIEGCGILFQRFST 222
+IEG GIL RF++
Sbjct: 125 LIEGAGILLTRFAS 138
>sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane translocase subunit Tim17
Length = 243
Score = 81.3 bits (199), Expect = 7e-16
Identities = 38/75 (50%), Positives = 49/75 (65%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WGG FS DC ++Y R+KEDP NSI+AG TGG L++R G + A G VLL
Sbjct: 65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVLLA 124
Query: 181 IIEGCGILFQRFSTQ 225
+IEG GI+ + Q
Sbjct: 125 LIEGAGIMLNKVLAQ 139
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 79.3 bits (194), Expect = 2e-15
Identities = 37/66 (56%), Positives = 48/66 (72%)
Frame = +1
Query: 1 SFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLG 180
SFA+WG TFS VDCAL++ R++ED NSIL+G TGG+LA R G +A A VG ++L
Sbjct: 64 SFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLA 123
Query: 181 IIEGCG 198
+IEG G
Sbjct: 124 MIEGAG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,386,336
Number of Sequences: 369166
Number of extensions: 859482
Number of successful extensions: 3096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3073
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)