Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N22
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 92 4e-19
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 91 1e-18
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 89 4e-18
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 88 5e-18
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 87 9e-18
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 87 9e-18
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 87 1e-17
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 87 2e-17
sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane t... 86 3e-17
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 84 8e-17
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 92.0 bits (227), Expect = 4e-19
Identities = 41/75 (54%), Positives = 53/75 (70%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
PVLGG+F +WGG FS DCA+ RK+EDP N+I+AG TGG LA+RGGW +
Sbjct: 59 PVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITC 118
Query: 183 AVLLGIIEGCGILFR 227
A LLG+IEG G++F+
Sbjct: 119 ACLLGVIEGVGLMFQ 133
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 90.5 bits (223), Expect = 1e-18
Identities = 43/90 (47%), Positives = 63/90 (70%)
Frame = +3
Query: 6 VLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGA 185
++GG+FA+WG TFS +DC+L+Y RKKEDP N+I++G TGG+LA R G + + A VG
Sbjct: 61 LVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGG 120
Query: 186 VLLGIIEGCGILFRDQYTAIVESHADISTI 275
LL +IEG GI+ Y+A +S+ +S +
Sbjct: 121 ALLALIEGVGIVV-SHYSA--DSYRQVSPV 147
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 88.6 bits (218), Expect = 4e-18
Identities = 44/80 (55%), Positives = 55/80 (68%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P +GGSFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G
Sbjct: 60 PQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMG 119
Query: 183 AVLLGIIEGCGILFRDQYTA 242
+LL +IEG GIL +YTA
Sbjct: 120 GILLALIEGVGILL-TRYTA 138
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 88.2 bits (217), Expect = 5e-18
Identities = 44/80 (55%), Positives = 55/80 (68%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P +GGSFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +G
Sbjct: 60 PQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMG 119
Query: 183 AVLLGIIEGCGILFRDQYTA 242
+LL +IEG GIL +YTA
Sbjct: 120 GILLALIEGVGILL-TRYTA 138
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 87.4 bits (215), Expect = 9e-18
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P LGGSFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G
Sbjct: 60 PQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMG 119
Query: 183 AVLLGIIEGCGIL 221
+LL +IEG GIL
Sbjct: 120 GILLALIEGAGIL 132
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 87.4 bits (215), Expect = 9e-18
Identities = 40/70 (57%), Positives = 53/70 (75%)
Frame = +3
Query: 12 GGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVL 191
G FA WGG FS +DC L+ RKKEDPINSI++GG+TG +LAIR G +AG A +G+V+
Sbjct: 61 GVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVI 120
Query: 192 LGIIEGCGIL 221
L +IEG G++
Sbjct: 121 LAMIEGVGLV 130
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P LGGSFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +G
Sbjct: 60 PQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMG 119
Query: 183 AVLLGIIEGCGIL 221
+LL +IEG GIL
Sbjct: 120 GILLALIEGAGIL 132
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 86.7 bits (213), Expect = 2e-17
Identities = 40/73 (54%), Positives = 51/73 (69%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P LGGSFA+WGG FS +DC ++ R KEDP NSI +G +TG +LA R G + G A +G
Sbjct: 60 PQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMG 119
Query: 183 AVLLGIIEGCGIL 221
+LL +IEG GIL
Sbjct: 120 GILLALIEGAGIL 132
>sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane translocase subunit Tim17
Length = 243
Score = 85.5 bits (210), Expect = 3e-17
Identities = 40/73 (54%), Positives = 50/73 (68%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P GGSFA+WGG FS DC ++Y R+KEDP NSI+AG TGG L++R G + A G
Sbjct: 60 PRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFG 119
Query: 183 AVLLGIIEGCGIL 221
VLL +IEG GI+
Sbjct: 120 GVLLALIEGAGIM 132
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 84.3 bits (207), Expect = 8e-17
Identities = 39/71 (54%), Positives = 51/71 (71%)
Frame = +3
Query: 3 PVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVG 182
P + GSFA+WG TFS VDCAL++ R++ED NSIL+G TGG+LA R G +A A VG
Sbjct: 59 PSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVG 118
Query: 183 AVLLGIIEGCG 215
++L +IEG G
Sbjct: 119 CLVLAMIEGAG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,454,208
Number of Sequences: 369166
Number of extensions: 820304
Number of successful extensions: 3228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3193
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)