Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_I18
(194 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 30 2.3
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 30 2.3
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 29 3.0
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 29 3.9
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 29 3.9
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 29 3.9
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 3 AFVGAVLLGIIEGCGILFQRFSTQ 74
A +G +LL +IEG GIL R++ Q
Sbjct: 116 AMMGGILLALIEGVGILLTRYTAQ 139
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 3 AFVGAVLLGIIEGCGILFQRFSTQ 74
A +G +LL +IEG GIL R++ Q
Sbjct: 116 AMMGGILLALIEGVGILLTRYTAQ 139
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 29.3 bits (64), Expect = 3.0
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 15 AVLLGIIEGCGILFQRFS 68
A LLG+IEG G++FQR++
Sbjct: 119 ACLLGVIEGVGLMFQRYA 136
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 3 AFVGAVLLGIIEGCGILFQRFST 71
A +G +LL +IEG GIL RF++
Sbjct: 116 AAMGGILLALIEGAGILLTRFAS 138
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 3 AFVGAVLLGIIEGCGILFQRFST 71
A +G +LL +IEG GIL RF++
Sbjct: 116 AAMGGILLALIEGAGILLTRFAS 138
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 3 AFVGAVLLGIIEGCGILFQRFST 71
A +G +LL +IEG GIL RF++
Sbjct: 116 AAMGGILLALIEGAGILLTRFAS 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,822,556
Number of Sequences: 369166
Number of extensions: 257899
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 68,354,980
effective HSP length: 36
effective length of database: 61,704,520
effective search space used: 1727726560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)