Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G10
(617 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 97 3e-20
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 96 1e-19
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 92 8e-19
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 92 8e-19
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 92 1e-18
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 92 1e-18
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 92 1e-18
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 92 1e-18
sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane t... 87 3e-17
sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane t... 86 1e-16
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 97.4 bits (241), Expect = 3e-20
Identities = 43/79 (54%), Positives = 57/79 (72%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+PVLGG+F +WGG FS DCA+ RK+EDP N+I+AG TGG LA+RGGW +
Sbjct: 58 APVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSIT 117
Query: 183 GAVLLGIIEGCGILFQRFS 239
A LLG+IEG G++FQR++
Sbjct: 118 CACLLGVIEGVGLMFQRYA 136
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 95.5 bits (236), Expect = 1e-19
Identities = 45/103 (43%), Positives = 65/103 (63%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
S ++GG+FA+WG TFS +DC+L+Y RKKEDP N+I++G TGG+LA R G + + A V
Sbjct: 59 SGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALV 118
Query: 183 GAVLLGIIEGCGILFQRFSTQAIVEESMPDNNQTISHQSLGLQ 311
G LL +IEG GI+ +S + + S + Q + L Q
Sbjct: 119 GGALLALIEGVGIVVSHYSADSYRQVSPVERQQRYKQELLRQQ 161
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 92.4 bits (228), Expect = 8e-19
Identities = 43/81 (53%), Positives = 56/81 (69%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P +GGSFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +
Sbjct: 59 APQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMM 118
Query: 183 GAVLLGIIEGCGILFQRFSTQ 245
G +LL +IEG GIL R++ Q
Sbjct: 119 GGILLALIEGVGILLTRYTAQ 139
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 92.4 bits (228), Expect = 8e-19
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P LGGSFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +
Sbjct: 59 APQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAM 118
Query: 183 GAVLLGIIEGCGILFQRFST 242
G +LL +IEG GIL RF++
Sbjct: 119 GGILLALIEGAGILLTRFAS 138
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 92.0 bits (227), Expect = 1e-18
Identities = 43/81 (53%), Positives = 56/81 (69%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P +GGSFA+WGG FS +DC L+ R KEDP NSI +G +TG VLA R G + G A +
Sbjct: 59 APQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMM 118
Query: 183 GAVLLGIIEGCGILFQRFSTQ 245
G +LL +IEG GIL R++ Q
Sbjct: 119 GGILLALIEGVGILLTRYTAQ 139
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 92.0 bits (227), Expect = 1e-18
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P LGGSFA+WGG FS +DC+++ R KEDP NSI +G +TG +LA R G + G A +
Sbjct: 59 APQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAM 118
Query: 183 GAVLLGIIEGCGILFQRFST 242
G +LL +IEG GIL RF++
Sbjct: 119 GGILLALIEGAGILLTRFAS 138
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 91.7 bits (226), Expect = 1e-18
Identities = 47/101 (46%), Positives = 67/101 (66%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
S + G FA WGG FS +DC L+ RKKEDPINSI++GG+TG +LAIR G +AG A +
Sbjct: 57 STLTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAIL 116
Query: 183 GAVLLGIIEGCGILFQRFSTQAIVEESMPDNNQTISHQSLG 305
G+V+L +IEG G++ R+ A+++ + P +SLG
Sbjct: 117 GSVILAMIEGVGLVTTRW-MGAMMDPTQPPPEALDDPRSLG 156
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 91.7 bits (226), Expect = 1e-18
Identities = 42/80 (52%), Positives = 56/80 (70%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P LGGSFA+WGG FS +DC ++ R KEDP NSI +G +TG +LA R G + G A +
Sbjct: 59 APQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAM 118
Query: 183 GAVLLGIIEGCGILFQRFST 242
G +LL +IEG GIL RF++
Sbjct: 119 GGILLALIEGAGILLTRFAS 138
>sp|Q9SP35|TIM17_ARATH Mitochondrial import inner membrane translocase subunit Tim17
Length = 243
Score = 87.4 bits (215), Expect = 3e-17
Identities = 41/81 (50%), Positives = 53/81 (65%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+P GGSFA+WGG FS DC ++Y R+KEDP NSI+AG TGG L++R G + A
Sbjct: 59 APRTGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIF 118
Query: 183 GAVLLGIIEGCGILFQRFSTQ 245
G VLL +IEG GI+ + Q
Sbjct: 119 GGVLLALIEGAGIMLNKVLAQ 139
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
(Mitochondrial protein import protein 2)
Length = 164
Score = 85.5 bits (210), Expect = 1e-16
Identities = 40/81 (49%), Positives = 52/81 (64%)
Frame = +3
Query: 3 SPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFV 182
+PVLGG+F +WGG FS DCA+ R+KEDP N+I+AG TGG LA+RGGW A
Sbjct: 59 APVLGGNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIG 118
Query: 183 GAVLLGIIEGCGILFQRFSTQ 245
A +L + EG GI R + +
Sbjct: 119 CACILAVFEGLGIALGRMNAE 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,447,295
Number of Sequences: 369166
Number of extensions: 1421264
Number of successful extensions: 4190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4157
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)