Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_B15
(437 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 114 1e-25
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 111 6e-25
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 110 2e-24
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 110 2e-24
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 109 3e-24
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 108 7e-24
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 107 1e-23
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 105 6e-23
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 102 3e-22
sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane t... 99 4e-21
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 114 bits (284), Expect = 1e-25
Identities = 55/126 (43%), Positives = 78/126 (61%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF++APSGL RL + RS ++GG+FA+WG TFS +DC+L+Y RKKEDP N+I++
Sbjct: 36 GFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIIS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMPDNNQTISH 365
G TGG+LA R G + + A VG LL +IEG GI+ +S + + S + Q
Sbjct: 96 GATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQQRYKQ 155
Query: 366 QSLGLQ 383
+ L Q
Sbjct: 156 ELLRQQ 161
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 111 bits (278), Expect = 6e-25
Identities = 53/104 (50%), Positives = 71/104 (68%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF++AP G+ RL +A +IR+P +GGSFA+WGG FS +DC L+ R KEDP NSI +
Sbjct: 36 GFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 317
G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 96 GALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 110 bits (274), Expect = 2e-24
Identities = 51/103 (49%), Positives = 72/103 (69%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++ R KEDP NSI +
Sbjct: 36 GFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 314
G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 96 GALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 110 bits (274), Expect = 2e-24
Identities = 51/103 (49%), Positives = 72/103 (69%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++ R KEDP NSI +
Sbjct: 36 GFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 314
G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 96 GALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 109 bits (272), Expect = 3e-24
Identities = 51/103 (49%), Positives = 71/103 (68%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC ++ R KEDP NSI +
Sbjct: 36 GFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 314
G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 96 GALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 108 bits (269), Expect = 7e-24
Identities = 51/104 (49%), Positives = 69/104 (66%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF++AP G+ R + +IR+P +GGSFA+WGG FS +DC L+ R KEDP NSI +
Sbjct: 36 GFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISS 95
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 317
G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 96 GALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 107 bits (266), Expect = 1e-23
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF+++P G +R A + K R+PVLGG+F +WGG FS DCA+ RK+EDP N+I+A
Sbjct: 37 GFRNSPLG--ERGSGAMSAIKARAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIA 94
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFS 311
G TGG LA+RGGW + A LLG+IEG G++FQR++
Sbjct: 95 GFFTGGALAVRGGWRHTRNSSITCACLLGVIEGVGLMFQRYA 136
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 105 bits (261), Expect = 6e-23
Identities = 49/95 (51%), Positives = 67/95 (70%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
GF++AP+GL +RL K+R+P + GSFA+WG TFS VDCAL++ R++ED NSIL+
Sbjct: 35 GFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILS 94
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCG 290
G TGG+LA R G +A A VG ++L +IEG G
Sbjct: 95 GAATGGILAARNGIRAMANSALVGCLVLAMIEGAG 129
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 102 bits (255), Expect = 3e-22
Identities = 54/124 (43%), Positives = 80/124 (64%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRKKEDPINSILA 185
G+K+A G K+L+ ++RS + G FA WGG FS +DC L+ RKKEDPINSI++
Sbjct: 36 GYKNAAKG--KKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVS 93
Query: 186 GGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEESMPDNNQTISH 365
GG+TG +LAIR G +AG A +G+V+L +IEG G++ R+ A+++ + P
Sbjct: 94 GGLTGALLAIRSGPKVMAGSAILGSVILAMIEGVGLVTTRW-MGAMMDPTQPPPEALDDP 152
Query: 366 QSLG 377
+SLG
Sbjct: 153 RSLG 156
>sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane translocase subunit tim-17
Length = 155
Score = 99.0 bits (245), Expect = 4e-21
Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Frame = +3
Query: 6 GFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYGRK-KEDPINSIL 182
GF+++P G +R I A T K+R+P LGG+F +WGG FS DCA+ R KEDP NSIL
Sbjct: 35 GFRNSPYG--ERRIGAITAIKMRAPALGGNFGVWGGLFSTFDCAIKGLRNHKEDPWNSIL 92
Query: 183 AGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVEE--SMPDNNQT 356
AG TGG LA+RGG+ A AVLL +IEG GI FQ+ A E + P +N+
Sbjct: 93 AGFFTGGALAVRGGYKAARNGAIGCAVLLAVIEGVGIGFQKMLAGATKLEAPAPPPSNEK 152
Query: 357 I 359
+
Sbjct: 153 V 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,905,381
Number of Sequences: 369166
Number of extensions: 1122736
Number of successful extensions: 3756
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)