Planaria EST Database

DrC_00802

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00802
         (759 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CJL0|SNF7_KLULA  Vacuolar sorting protein SNF7 (Vacuola...    39   0.015
sp|Q6IQ73|CHM4C_BRARE  Charged multivesicular body protein 4...    38   0.034
sp|Q9H444|CHM4B_HUMAN  Charged multivesicular body protein 4...    36   0.098
sp|Q9D8B3|CHM4B_MOUSE  Charged multivesicular body protein 4...    36   0.098
sp|Q6GNN8|CHM4C_XENLA  Charged multivesicular body protein 4...    36   0.13 
sp|Q5ABD0|SNF7_CANAL  Vacuolar sorting protein SNF7 (Vacuola...    35   0.17 
sp|Q7ZVC4|CHM4B_BRARE  Charged multivesicular body protein 4...    35   0.17 
sp|Q5ZHP5|CHM4B_CHICK  Charged multivesicular body protein 4...    35   0.17 
sp|P59074|CG301_HUMAN  Hypothetical protein CGI-301                35   0.22 
sp|Q6FW96|SNF7_CANGA  Vacuolar sorting protein SNF7 (Vacuola...    35   0.22 

>sp|Q6CJL0|SNF7_KLULA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 232

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 15/29 (51%), Positives = 25/29 (86%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LKAMKQ ++A+K+ H+ +D+DKV+D +D+
Sbjct: 101 LKAMKQGASAMKNIHKGLDLDKVDDTMDE 129

>sp|Q6IQ73|CHM4C_BRARE Charged multivesicular body protein 4c (Chromatin modifying protein
           4c) (CHMP4c)
          Length = 224

 Score = 37.7 bits (86), Expect = 0.034
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A+K++H+NMD+DKV+D++ D
Sbjct: 104 LKNMGFAAKAMKTAHENMDIDKVDDLMQD 132

>sp|Q9H444|CHM4B_HUMAN Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2)
           (hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32)
          Length = 224

 Score = 36.2 bits (82), Expect = 0.098
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A+K++H NMD+DKV++++ D
Sbjct: 106 LKNMGYAAKAMKAAHDNMDIDKVDELMQD 134

>sp|Q9D8B3|CHM4B_MOUSE Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 224

 Score = 36.2 bits (82), Expect = 0.098
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A+K++H NMD+DKV++++ D
Sbjct: 106 LKNMGYAAKAMKAAHDNMDIDKVDELMQD 134

>sp|Q6GNN8|CHM4C_XENLA Charged multivesicular body protein 4c (Chromatin modifying protein
           4c) (CHMP4c)
          Length = 227

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 13/29 (44%), Positives = 24/29 (82%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A+K++H+NMD++K++D++ D
Sbjct: 110 LKNMGYAAKAMKAAHENMDLEKIDDLMQD 138

>sp|Q5ABD0|SNF7_CANAL Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 226

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           +KAMKQ + A+K  H   DVDKV D +D+
Sbjct: 102 MKAMKQGAKAMKQIHGEYDVDKVEDTMDE 130

>sp|Q7ZVC4|CHM4B_BRARE Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 220

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 13/29 (44%), Positives = 23/29 (79%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           +K M  A+ A+K++H NMD+DKV++++ D
Sbjct: 104 IKNMGYAAKAMKAAHDNMDIDKVDELMQD 132

>sp|Q5ZHP5|CHM4B_CHICK Charged multivesicular body protein 4b (Chromatin modifying protein
           4b) (CHMP4b)
          Length = 227

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A+K++H NMD+DKV++++ D
Sbjct: 108 LKNMGFAAKAMKAAHDNMDIDKVDELMQD 136

>sp|P59074|CG301_HUMAN Hypothetical protein CGI-301
          Length = 171

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           LK M  A+ A K++H NMD+DKV++++ D
Sbjct: 66  LKNMGSAAKAKKAAHDNMDIDKVDELMQD 94

>sp|Q6FW96|SNF7_CANGA Vacuolar sorting protein SNF7 (Vacuolar protein sorting-associated
           protein VPS32)
          Length = 228

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 12/29 (41%), Positives = 23/29 (79%)
 Frame = -2

Query: 89  LKAMKQASTALKSSHQNMDVDKVNDILDD 3
           ++AMKQ + A+KS H  +D+D+V++ +D+
Sbjct: 102 MRAMKQGAKAMKSIHSGLDIDRVDETMDE 130

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,159,912
Number of Sequences: 369166
Number of extensions: 1856569
Number of successful extensions: 4602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4589
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00802

  1. Dr_sW_026_F09
  2. Dr_sW_028_B19
  3. Dr_sW_024_C09
  4. Dr_sW_023_J14
  5. Dr_sW_023_N02
  6. Dr_sW_020_K06
  7. Dr_sW_028_B09
  8. Dr_sW_002_H09
  9. Dr_sW_006_D01
  10. Dr_sW_027_D14
  11. Dr_sW_014_F04
  12. Dr_sW_022_J15
  13. Dr_sW_016_L17
  14. Dr_sW_012_P08
  15. Dr_sW_018_L17
  16. Dr_sW_009_N05
  17. Dr_sW_012_L17
  18. Dr_sW_006_H22
  19. Dr_sW_013_G08
  20. Dr_sW_019_G01
  21. Dr_sW_009_I22
  22. Dr_sW_022_H02
  23. Dr_sW_006_F03
  24. Dr_sW_024_M22
  25. Dr_sW_020_C01
  26. Dr_sW_011_L23
  27. Dr_sW_021_I15
  28. Dr_sW_022_F02
  29. Dr_sW_016_B20
  30. Dr_sW_013_N18
  31. Dr_sW_011_A21
  32. Dr_sW_008_P21
  33. Dr_sW_019_G15
  34. Dr_sW_012_K15
  35. Dr_sW_008_K16
  36. Dr_sW_020_E05
  37. Dr_sW_012_B21
  38. Dr_sW_011_L13
  39. Dr_sW_022_E11
  40. Dr_sW_010_C17
  41. Dr_sW_007_E16
  42. Dr_sW_007_B14
  43. Dr_sW_010_C07
  44. Dr_sW_010_A10
  45. Dr_sW_023_A15
  46. Dr_sW_006_M22
  47. Dr_sW_004_C04
  48. Dr_sW_018_B05
  49. Dr_sW_017_B10
  50. Dr_sW_016_G09
  51. Dr_sW_015_G04
  52. Dr_sW_020_J14
  53. Dr_sW_018_N12
  54. Dr_sW_002_P10
  55. Dr_sW_027_A04
  56. Dr_sW_021_G23
  57. Dr_sW_024_C10
  58. Dr_sW_021_F17
  59. Dr_sW_019_A22
  60. Dr_sW_008_F04
  61. Dr_sW_025_L22
  62. Dr_sW_018_O09
  63. Dr_sW_022_L09
  64. Dr_sW_021_I04
  65. Dr_sW_020_H07
  66. Dr_sW_020_F04
  67. Dr_sW_015_C07
  68. Dr_sW_013_F07
  69. Dr_sW_011_A04
  70. Dr_sW_002_I18
  71. Dr_sW_028_I02
  72. Dr_sW_027_E23
  73. Dr_sW_004_I18
  74. Dr_sW_007_J02
  75. Dr_sW_027_G08
  76. Dr_sW_008_J03
  77. Dr_sW_001_J16
  78. Dr_sW_001_N13
  79. Dr_sW_010_C06
  80. Dr_sW_001_K21
  81. Dr_sW_001_M08
  82. Dr_sW_005_O07
  83. Dr_sW_014_H18
  84. Dr_sW_001_H05
  85. Dr_sW_014_E12
  86. Dr_sW_007_A04
  87. Dr_sW_005_B01