Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_O07
(312 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42733|RS11C_ARATH 40S ribosomal protein S11-3 31 1.0
sp|P16181|RS11A_ARATH 40S ribosomal protein S11-1 30 2.3
sp|P17093|RS11_SOYBN 40S ribosomal protein S11 28 5.0
sp|P25460|RS11_MAIZE 40S ribosomal protein S11 28 6.6
sp|O65569|RS11B_ARATH 40S ribosomal protein S11-2 28 6.6
sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link prot... 28 8.6
sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11 28 8.6
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 28 8.6
>sp|P42733|RS11C_ARATH 40S ribosomal protein S11-3
Length = 159
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW++I L P AI G + S P + ++G + G C S
Sbjct: 31 GGNRFWKNIGLGFKTpreAIDGAYIDSKCP-FTGTVSIRGRILAG-TCHS 78
>sp|P16181|RS11A_ARATH 40S ribosomal protein S11-1
Length = 160
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW++I L P AI G + P + ++G + G C S
Sbjct: 31 GGNRFWKNIGLGFKTpreAIDGAYVDKKCP-FTGTVSIRGRILAG-TCHS 78
>sp|P17093|RS11_SOYBN 40S ribosomal protein S11
Length = 159
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW+ I L P AI G + P + ++G + G C S
Sbjct: 31 GGNRFWKSIGLGFKTpreAIEGTYIDKKCP-FTGNVSIRGRILAG-TCHS 78
>sp|P25460|RS11_MAIZE 40S ribosomal protein S11
Length = 159
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW+ I L P AI G + P + ++G + G C S
Sbjct: 31 GGNRFWKSIGLGFKTpreAIEGTYIDKKCP-FTGTVSIRGRIIAG-TCHS 78
>sp|O65569|RS11B_ARATH 40S ribosomal protein S11-2
Length = 159
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW++I L P AI G + P + ++G + G C S
Sbjct: 31 GGNRFWKNIGLGFKTpreAIEGTYIDQKCP-FTGTVSIRGRILSG-TCHS 78
>sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link protein 3 precursor (Link protein
3)
Length = 359
Score = 27.7 bits (60), Expect = 8.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 190 YGGKEHNIHHYEVLCFS 240
YG + H +H Y+V CF+
Sbjct: 245 YGQRHHRLHRYDVFCFA 261
>sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11
Length = 159
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 19 GGEHFWQHIALNGNVPHNAIVGGHTSSNEPLYVARARVQGEMCVGKVCQS 168
GG FW+ I L P AI G + P + ++G + G C S
Sbjct: 31 GGNRFWKSIGLGFKTpreAIDGTYIDKKCP-FTGTVSIRGRILAG-TCHS 78
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 76 IVGGHTSSNEPLYVARARVQ 135
I+G HTS NEP Y+ A+VQ
Sbjct: 67 ILGTHTSENEPNYLMLAQVQ 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,005,593
Number of Sequences: 369166
Number of extensions: 665797
Number of successful extensions: 1779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)