Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B01
(553 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore prot... 30 3.0
sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 (PI... 30 3.9
sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 (PI... 30 5.1
sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein ... 29 6.7
sp|P35169|TOR1_YEAST Phosphatidylinositol 3-kinase TOR1 (PI... 29 6.7
>sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore protein NUP188)
Length = 1655
Score = 30.4 bits (67), Expect = 3.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 288 VIDRLCRHTFHLEHELLQRKEVHYWKYDLRL*HYEVHFHLTCVAKNVRH 142
+I++L H H+ + + WKY+ L +E+ FHLT + +V H
Sbjct: 738 IINKLILHAIHIF------ESYYNWKYNNFLQKFEIAFHLTLIFYDVLH 780
>sp|Q9Y7K2|TOR2_SCHPO Phosphatidylinositol 3-kinase tor2 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2337
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 85 EKTPFQITRYYVILVCMFSVANIFGNTCQMEMYLIML*SEVILPVMNLFTLQELV 249
EK PF++TR V + + + F TC+ M ++ E ++ V+ F L+
Sbjct: 2175 EKIPFRLTRMLVNAMEVSGIEGTFRITCEHVMRVLRTNKESVMAVLEAFVYDPLI 2229
>sp|O14356|TOR1_SCHPO Phosphatidylinositol 3-kinase tor1 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2335
Score = 29.6 bits (65), Expect = 5.1
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 85 EKTPFQITRYYVILVCMFSVANIFGNTCQMEMYLIML*SEVILPVMNLFTLQELV 249
EK PF++TR + + + + + TC++ M ++ +E ++ V+ F L+
Sbjct: 2172 EKIPFRLTRMLINAMEVSGIQGTYKITCELVMRVLRSNTESLMAVLEAFVYDPLI 2226
>sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein Gp38)
Length = 266
Score = 29.3 bits (64), Expect = 6.7
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Frame = +3
Query: 66 FFPYAGREDTIPNYEVLCDTGLHVFGGEHFWQHMSNGNVPH-----NAIVGGHTSSNE 224
FF Y DT Y VL ++ GG H W NG H N GGH N+
Sbjct: 93 FFMYG---DTPNEYVVL-----NIHGGVHMWGRGGNGGYTHSGGDGNGTQGGHVIQND 142
>sp|P35169|TOR1_YEAST Phosphatidylinositol 3-kinase TOR1 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2470
Score = 29.3 bits (64), Expect = 6.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 85 EKTPFQITRYYVILVCMFSVANIFGNTCQMEMYLIML*SEVILPVMNLFTLQELV 249
EK PF++TR + + + F TC+ M ++ E ++ ++ F L L+
Sbjct: 2310 EKVPFRLTRMLTYAMEVSGIEGSFRITCENVMRVLRDNKESLMAILEAFALDPLI 2364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,727,105
Number of Sequences: 369166
Number of extensions: 1313378
Number of successful extensions: 3252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3252
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)