Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_D14
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore prot... 28 6.5
sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link prot... 28 8.5
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 28 8.5
>sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore protein NUP188)
Length = 1655
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 143 VIDRLCRHTFHLEHELLQRKEVHYWKYDLRL*HYEVHFHLTCVAKNV 3
+I++L H H+ + + WKY+ L +E+ FHLT + +V
Sbjct: 738 IINKLILHAIHIF------ESYYNWKYNNFLQKFEIAFHLTLIFYDV 778
>sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link protein 3 precursor (Link protein
3)
Length = 359
Score = 27.7 bits (60), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 164 YGGKEHNIHHYEVLCFS 214
YG + H +H Y+V CF+
Sbjct: 245 YGQRHHRLHRYDVFCFA 261
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 50 IVGGHTSSNEPLYVARARVQ 109
I+G HTS NEP Y+ A+VQ
Sbjct: 67 ILGTHTSENEPNYLMLAQVQ 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,055,883
Number of Sequences: 369166
Number of extensions: 563286
Number of successful extensions: 1495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)