Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_J15
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore prot... 30 1.3
sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein ... 28 5.0
sp|Q646L1|MATK_PLETI Maturase K (Intron maturase) 28 5.0
sp|Q9H239|MMP28_HUMAN Matrix metalloproteinase-28 precursor... 28 8.5
sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link prot... 28 8.5
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 28 8.5
>sp|P52593|NU188_YEAST Nucleoporin NUP188 (Nuclear pore protein NUP188)
Length = 1655
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 174 VIDRLCRHTFHLEHELLQRKEVHYWKYDLRL*HYEVHFHLTCVAKNVRH 28
+I++L H H+ + + WKY+ L +E+ FHLT + +V H
Sbjct: 738 IINKLILHAIHIF------ESYYNWKYNNFLQKFEIAFHLTLIFYDVLH 780
>sp|P08233|VG38_BPOX2 Receptor recognizing protein (Protein Gp38)
Length = 266
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +3
Query: 15 LHVFGGEHFWQHMSNGNVPH-----NAIVGGHTSSNE 110
L++ GG H W NG H N GGH N+
Sbjct: 106 LNIHGGVHMWGRGGNGGYTHSGGDGNGTQGGHVIQND 142
>sp|Q646L1|MATK_PLETI Maturase K (Intron maturase)
Length = 505
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 180 SHVIDR---LCRHTFHLEHELLQRKEVHYWKYDLRL*HYEVHFHLTCVAKNVRHRKH 19
SH+IDR +CR+ H ++K ++ KY LR L+CV VR K+
Sbjct: 399 SHIIDRFVRICRNLSHYHSGSSKKKSLYRIKYILR---------LSCVKSLVRKHKN 446
>sp|Q9H239|MMP28_HUMAN Matrix metalloproteinase-28 precursor (MMP-28) (Epilysin)
Length = 520
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 15 LHVFGGEHFWQHMSNGNV 68
L++F G HFW+ ++GNV
Sbjct: 339 LYIFKGSHFWEVAADGNV 356
>sp|Q80WM5|HPLN3_MOUSE Hyaluronan and proteoglycan link protein 3 precursor (Link protein
3)
Length = 359
Score = 27.7 bits (60), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 195 YGGKEHNIHHYEVLCFS 245
YG + H +H Y+V CF+
Sbjct: 245 YGQRHHRLHRYDVFCFA 261
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 81 IVGGHTSSNEPLYVARARVQ 140
I+G HTS NEP Y+ A+VQ
Sbjct: 67 ILGTHTSENEPNYLMLAQVQ 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,083,319
Number of Sequences: 369166
Number of extensions: 695183
Number of successful extensions: 1927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)