Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N05
(529 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein ... 31 1.6
sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC) 31 2.1
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein ... 30 2.8
sp|O52071|PEPO_LACHE Neutral endopeptidase (Endopeptidase O) 30 3.6
sp|P26395|RFBI_SALTY Protein rfbI 30 4.7
sp|Q880Z4|XYLA_PSESM Xylose isomerase 29 6.1
sp|Q9J563|V170_FOWPV Protein FPV170 29 8.0
>sp|Q9JLL0|CRIM1_MOUSE Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1028
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 314 EVCPPTLAF*GTFPFDMCCQKCSPPKTCKPVSHNTS*FGMVSSLPAYGKN 165
EVCPP L + D CC +C+ SHN S+P+Y +N
Sbjct: 704 EVCPPLLCQNPSRTQDSCCPQCTDDPPQPSTSHN-------ESVPSYCRN 746
>sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC)
Length = 515
Score = 30.8 bits (68), Expect = 2.1
Identities = 28/154 (18%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Frame = -1
Query: 475 LLKYNQRNIDLHNDIYC---SLFRGIAYKRIHVIDSFCPHTFYLEHELLQRKEIHYWKYV 305
+++Y+ N+ ++ ++ S I Y +HVI + H + Q +H +Y
Sbjct: 66 VIQYSTLNVIQYSTLHVIQYSTLHVIQYSILHVIQ-YSIHVIQYSIHVTQYSILHVIQYS 124
Query: 304 LRLLHFEVH---FHLTCVAKNVHPRKHANLYHIIPRNLEWCLLFQHTERIQCYARFLLFQ 134
+ ++ + +H + + ++H +++ H+I ++ + Q++ + Y+ ++ Q
Sbjct: 125 IHVIQYSIHVIQYSTHVIQYSIHVIQYS--IHVIQYSI--LHVIQYSIHVIQYSIHVI-Q 179
Query: 133 YSTPLHFYSGQCISHYRLE*LYKELVHIVLVSMI 32
YST + YS I + L + ++H++ S++
Sbjct: 180 YSTHVIQYSIHVIQYSILHVIQYSILHVIQYSIL 213
>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1048
Score = 30.4 bits (67), Expect = 2.8
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -3
Query: 314 EVCPPTLAF*GTFPFDMCCQKCSPPKTCKPVSHNTS*FGMVSSLPAYGKN 165
EVCPP L T D CC +C +S N S+P+Y KN
Sbjct: 725 EVCPPLLCQNPTRTQDSCCPQCPDEPLQPSLSSNV-------SMPSYCKN 767
>sp|O52071|PEPO_LACHE Neutral endopeptidase (Endopeptidase O)
Length = 647
Score = 30.0 bits (66), Expect = 3.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 289 NARVGGHTSSNESLYVARARVQGKMCVGKNCRS-HGCACMRYRGKENNI 432
N RVG + L A++ GK VG+N G AC GK +N+
Sbjct: 528 NKRVGQMVDIFDGLQYGPAKINGKQVVGENIADLAGLACAVQAGKNDNV 576
>sp|P26395|RFBI_SALTY Protein rfbI
Length = 330
Score = 29.6 bits (65), Expect = 4.7
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 25 ASLSWRPGQYGQVPYKAIQADSGLYIVRCRNGGELNIGKAKNGHSTGFFPYAGREDTIPN 204
A + + PGQY + YK + + NG EL++ NG + +E+T+
Sbjct: 122 AKIGFLPGQYINLHYKGVTRSYSIANSDESNGIELHVRNVPNGQMSSLIFGELQENTLMR 181
Query: 205 YEVLCDT 225
E C T
Sbjct: 182 IEGPCGT 188
>sp|Q880Z4|XYLA_PSESM Xylose isomerase
Length = 438
Score = 29.3 bits (64), Expect = 6.1
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +1
Query: 124 ELNIGKAKNGHSTGFFPYAGREDTIPNYEVLCDTGLHVFGGEHFWQHMSNGNVPQNARVG 303
+ N G +NG T FP + E T+ YE+L G GG +F + ++
Sbjct: 295 DANRGDPQNGWDTDQFPNSVEEMTLATYEIL-KAGGFTHGGYNFDSKVRRQSLDDVDLFH 353
Query: 304 GHTSSNESLYVARAR 348
GH ++ + L ++ R
Sbjct: 354 GHVAAMDVLALSLER 368
>sp|Q9J563|V170_FOWPV Protein FPV170
Length = 374
Score = 28.9 bits (63), Expect = 8.0
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = +2
Query: 260 NTCQMEMYLKMQESEDILPVMNLFTLQELVFKVKCVWAKTVDHMDALVCDTAEKRTIYII 439
NT + +K++E +D+ F+ + ++F +KC T+D +D + + +
Sbjct: 189 NTDVVSDKIKLEEYKDVFS----FSKENVIFGIKCFCDITIDGIDQI-----NNKYVSFF 239
Query: 440 MKIYVSLIIFQ 472
K+ ++I+FQ
Sbjct: 240 KKVLPNIILFQ 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,390,999
Number of Sequences: 369166
Number of extensions: 1637053
Number of successful extensions: 4093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4086
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)